Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14b20
         (395 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010228-1|AAH10228.1|  616|Homo sapiens C1orf71 protein protein.      32   0.79 
AL834246-1|CAD38922.2|  795|Homo sapiens hypothetical protein pr...    32   0.79 
AK056563-1|BAB71218.1|  725|Homo sapiens protein ( Homo sapiens ...    32   0.79 

>BC010228-1|AAH10228.1|  616|Homo sapiens C1orf71 protein protein.
          Length = 616

 Score = 31.9 bits (69), Expect = 0.79
 Identities = 25/77 (32%), Positives = 32/77 (41%)
 Frame = -1

Query: 269 DNADNSXKTKSNDRLNNENTSTDYDXEXEEXVNTFNSRKRRVVAKRAFNXKSKKIPIGKC 90
           D+A    +    D LNN N S     E     N+ N+       ++AF  K KKIP    
Sbjct: 55  DSAMGKPQVSEQDSLNN-NESCTLSCEVAAGENSQNTLCEASRDEQAFLGKDKKIP---- 109

Query: 89  GVRSPRKRLKQHTNTPP 39
           G RSPR +       PP
Sbjct: 110 GKRSPRSKKGTAKKIPP 126


>AL834246-1|CAD38922.2|  795|Homo sapiens hypothetical protein
           protein.
          Length = 795

 Score = 31.9 bits (69), Expect = 0.79
 Identities = 25/77 (32%), Positives = 32/77 (41%)
 Frame = -1

Query: 269 DNADNSXKTKSNDRLNNENTSTDYDXEXEEXVNTFNSRKRRVVAKRAFNXKSKKIPIGKC 90
           D+A    +    D LNN N S     E     N+ N+       ++AF  K KKIP    
Sbjct: 125 DSAMGKPQVSEQDSLNN-NESCTLSCEVAAGENSQNTLCEASRDEQAFLGKDKKIP---- 179

Query: 89  GVRSPRKRLKQHTNTPP 39
           G RSPR +       PP
Sbjct: 180 GKRSPRSKKGTAKKIPP 196


>AK056563-1|BAB71218.1|  725|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32001 fis, clone NT2RP7009373. ).
          Length = 725

 Score = 31.9 bits (69), Expect = 0.79
 Identities = 25/77 (32%), Positives = 32/77 (41%)
 Frame = -1

Query: 269 DNADNSXKTKSNDRLNNENTSTDYDXEXEEXVNTFNSRKRRVVAKRAFNXKSKKIPIGKC 90
           D+A    +    D LNN N S     E     N+ N+       ++AF  K KKIP    
Sbjct: 55  DSAMGKPQVSEQDSLNN-NESCTLSCEVAAGENSQNTLCEASRDEQAFLGKDKKIP---- 109

Query: 89  GVRSPRKRLKQHTNTPP 39
           G RSPR +       PP
Sbjct: 110 GKRSPRSKKGTAKKIPP 126


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,327,403
Number of Sequences: 237096
Number of extensions: 503982
Number of successful extensions: 939
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)