Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14b20
         (395 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118689-1|AAM50549.1|  893|Drosophila melanogaster AT15637p pro...    33   0.18 
AE013599-3102|AAM68188.1|  889|Drosophila melanogaster CG10543-P...    33   0.18 
AE013599-3101|AAO41340.1| 1024|Drosophila melanogaster CG10543-P...    33   0.18 
AE013599-3100|AAF46652.3| 1634|Drosophila melanogaster CG10543-P...    33   0.18 
AY118565-1|AAM49934.1|  166|Drosophila melanogaster LD40063p pro...    30   0.97 
AE014134-3305|AAF53936.1|  166|Drosophila melanogaster CG9335-PA...    30   0.97 
AY060426-1|AAL25465.1|  195|Drosophila melanogaster LD40846p pro...    29   3.0  
AE014298-2908|AAF48998.1|  195|Drosophila melanogaster CG14216-P...    29   3.0  

>AY118689-1|AAM50549.1|  893|Drosophila melanogaster AT15637p
           protein.
          Length = 893

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 161 SRKRRVVAK-RAFNXKS-KKIPIGKCGVRSPRKRLKQHTNTPPH 36
           SRK++  A   + N K  K  P G+CG++ P+K+L+QH     H
Sbjct: 44  SRKQQFHAHVESHNKKEIKTFPCGECGLKFPQKKLQQHFEETGH 87


>AE013599-3102|AAM68188.1|  889|Drosophila melanogaster CG10543-PB,
           isoform B protein.
          Length = 889

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 161 SRKRRVVAK-RAFNXKS-KKIPIGKCGVRSPRKRLKQHTNTPPH 36
           SRK++  A   + N K  K  P G+CG++ P+K+L+QH     H
Sbjct: 44  SRKQQFHAHVESHNKKEIKTFPCGECGLKFPQKKLQQHFEETGH 87


>AE013599-3101|AAO41340.1| 1024|Drosophila melanogaster CG10543-PC,
           isoform C protein.
          Length = 1024

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 161 SRKRRVVAK-RAFNXKS-KKIPIGKCGVRSPRKRLKQHTNTPPH 36
           SRK++  A   + N K  K  P G+CG++ P+K+L+QH     H
Sbjct: 179 SRKQQFHAHVESHNKKEIKTFPCGECGLKFPQKKLQQHFEETGH 222


>AE013599-3100|AAF46652.3| 1634|Drosophila melanogaster CG10543-PA,
           isoform A protein.
          Length = 1634

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 161 SRKRRVVAK-RAFNXKS-KKIPIGKCGVRSPRKRLKQHTNTPPH 36
           SRK++  A   + N K  K  P G+CG++ P+K+L+QH     H
Sbjct: 789 SRKQQFHAHVESHNKKEIKTFPCGECGLKFPQKKLQQHFEETGH 832


>AY118565-1|AAM49934.1|  166|Drosophila melanogaster LD40063p
           protein.
          Length = 166

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -1

Query: 287 DIXXXDDNADNSX-KTKSNDRLNNENTSTDYDXEXEEXVNTFNSRKRRVVAKRAFNXKSK 111
           D+   +DN      K ++ + L + N + + D E      T      +++ KR     +K
Sbjct: 51  DVTFQEDNIPTDLIKERNINLLRSCNGTINSDHERAVCRKTVEENNGKLITKRFCYYTNK 110

Query: 110 KIPIGKCGVRSPRKRLKQ 57
             P+  C + SP K +++
Sbjct: 111 SDPVELCNITSPEKNVRR 128


>AE014134-3305|AAF53936.1|  166|Drosophila melanogaster CG9335-PA
           protein.
          Length = 166

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -1

Query: 287 DIXXXDDNADNSX-KTKSNDRLNNENTSTDYDXEXEEXVNTFNSRKRRVVAKRAFNXKSK 111
           D+   +DN      K ++ + L + N + + D E      T      +++ KR     +K
Sbjct: 51  DVTFQEDNIPTDLIKERNINLLRSCNGTINSDHERAVCRKTVEENNGKLITKRFCYYTNK 110

Query: 110 KIPIGKCGVRSPRKRLKQ 57
             P+  C + SP K +++
Sbjct: 111 SDPVELCNITSPEKNVRR 128


>AY060426-1|AAL25465.1|  195|Drosophila melanogaster LD40846p
           protein.
          Length = 195

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 233 DRLNNENTSTDYDXEXEEXVNTFNSRKRRVV 141
           D +N    STD D + +E +  F  R++RV+
Sbjct: 158 DMINMMAKSTDLDNDIDELIQEFEERRKRVI 188


>AE014298-2908|AAF48998.1|  195|Drosophila melanogaster CG14216-PA
           protein.
          Length = 195

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 233 DRLNNENTSTDYDXEXEEXVNTFNSRKRRVV 141
           D +N    STD D + +E +  F  R++RV+
Sbjct: 158 DMINMMAKSTDLDNDIDELIQEFEERRKRVI 188


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,949
Number of Sequences: 53049
Number of extensions: 162520
Number of successful extensions: 595
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)