Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14b20
(395 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p... 30 0.69
Z49132-12|CAA88990.3| 931|Caenorhabditis elegans Hypothetical p... 29 1.2
Z48716-7|CAA88602.3| 931|Caenorhabditis elegans Hypothetical pr... 29 1.2
U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical pr... 28 2.8
U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical p... 26 8.5
Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical p... 26 8.5
Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical p... 26 8.5
AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication l... 26 8.5
>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
protein F26E4.10 protein.
Length = 1086
Score = 29.9 bits (64), Expect = 0.69
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -1
Query: 272 DDNADNSXKTKSNDRLNNENTSTDYDXEXEEXVNTFNSRKRRVVAKRAFN--XKSKKIPI 99
DD+ D+ + +++ N + D E ++ T N R ++ AKR N K ++I +
Sbjct: 183 DDSNDSQDEASTSEPTNRQAPEADKTGEVKDEKQTCNRRNQQRKAKRLRNFEEKERQITL 242
Query: 98 GKCGVRSPRKRLKQHTN 48
K G+ R K H N
Sbjct: 243 LKKGI----DRKKTHPN 255
>Z49132-12|CAA88990.3| 931|Caenorhabditis elegans Hypothetical
protein F59B10.1 protein.
Length = 931
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 137 KRAFNXKSKKIPIGKCGVRSPRKRLKQHTNTPPHYDIQRRXGPKI 3
K +F ++P + +R R K HT+TP ++IQ R K+
Sbjct: 322 KLSFCGVKAEMPSSEITIRQSRADRKPHTHTPVLFEIQERRMTKV 366
>Z48716-7|CAA88602.3| 931|Caenorhabditis elegans Hypothetical
protein F59B10.1 protein.
Length = 931
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 137 KRAFNXKSKKIPIGKCGVRSPRKRLKQHTNTPPHYDIQRRXGPKI 3
K +F ++P + +R R K HT+TP ++IQ R K+
Sbjct: 322 KLSFCGVKAEMPSSEITIRQSRADRKPHTHTPVLFEIQERRMTKV 366
>U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical
protein C01B7.1a protein.
Length = 935
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -1
Query: 272 DDNADNSXKTKSNDRLNNENTSTDYDXEXEEXVNTFNSRKRRVVAKRAFNXKSKK 108
DD ++ + + D +E D D E EE +S+ + +RAFN +SKK
Sbjct: 713 DDEVEHEQEHEDEDGEGDE----DDDGEGEETTPITSSKSSKKKWRRAFNIRSKK 763
>U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical
protein ZC449.5 protein.
Length = 493
Score = 27.1 bits (57), Expect = 4.9
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = -1
Query: 272 DDNADNSXKTKSNDRLNNENTSTDYDXEXEEXVNTFNSRKRRVVAKRAFNXKSKKIPIGK 93
DD+ + + KS+ + + + +TD EE +T S K++ +K+A + P
Sbjct: 83 DDSEEETTTVKSHKKKSTK--TTDAPKTTEEPASTKKSEKKKTESKKAVKTTTTAAPAES 140
Query: 92 CGVRSP 75
+P
Sbjct: 141 AETETP 146
>Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 335 KNSWIXRKAAFEIVXXDIXXXDDNADNSXKTKSNDRLNNE-NTSTDYDXEXE 183
K + + K+ + DI DD+ DN+ D+ N + S D+D E E
Sbjct: 650 KAAELLNKSIVRVEQPDIALDDDDFDNNIMVVEADKENQRGDDSMDHDGEKE 701
>Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 335 KNSWIXRKAAFEIVXXDIXXXDDNADNSXKTKSNDRLNNE-NTSTDYDXEXE 183
K + + K+ + DI DD+ DN+ D+ N + S D+D E E
Sbjct: 650 KAAELLNKSIVRVEQPDIALDDDDFDNNIMVVEADKENQRGDDSMDHDGEKE 701
>Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical
protein ZK632.1b protein.
Length = 516
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 335 KNSWIXRKAAFEIVXXDIXXXDDNADNSXKTKSNDRLNNE-NTSTDYDXEXE 183
K + + K+ + DI DD+ DN+ D+ N + S D+D E E
Sbjct: 356 KAAELLNKSIVRVEQPDIALDDDDFDNNIMVVEADKENQRGDDSMDHDGEKE 407
>AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication
licensing factor MCM2/3/5-type protein protein.
Length = 810
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 335 KNSWIXRKAAFEIVXXDIXXXDDNADNSXKTKSNDRLNNE-NTSTDYDXEXE 183
K + + K+ + DI DD+ DN+ D+ N + S D+D E E
Sbjct: 650 KAAELLNKSIVRVEQPDIALDDDDFDNNIMVVEADKENQRGDDSMDHDGEKE 701
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,288,141
Number of Sequences: 27780
Number of extensions: 86596
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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