Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14b20
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   0.96 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   1.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   2.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   3.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 0.96
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 272 DDNADNSXKTKSNDRLNNENTSTD 201
           + NADN    K N    N+N   D
Sbjct: 444 NQNADNQNANKQNGNRQNDNRQND 467


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 272 DDNADNSXKTKSNDRLNNEN 213
           D+N  N+ K  +N + NN+N
Sbjct: 431 DNNQKNNKKNANNQKNNNQN 450


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = -1

Query: 233 DRLNNENTSTDY---DXEXEEXVNTFNSRKRRVVAKRAFNXKSKKIPIGKCGVRSPRKRL 63
           +R     T T Y   + E E   N + +R+RR+    A     ++I I     R   K+ 
Sbjct: 269 ERKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 328

Query: 62  KQHTNTPPHYDIQRRXGPK 6
            +   TP   D      P+
Sbjct: 329 NKSKGTPGSGDGDTEISPQ 347


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 62  KQHTNTPPHYDIQRRXGPKI 3
           ++H NT P Y +Q+   P I
Sbjct: 413 QEHKNTLPQYTVQQLDFPGI 432


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 99  DRNFFGFXIKRPLSD 143
           D+  FGF + +PL D
Sbjct: 643 DKRSFGFPLDKPLYD 657


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 99  DRNFFGFXIKRPLSD 143
           D+  FGF + +PL D
Sbjct: 643 DKRSFGFPLDKPLYD 657


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,274
Number of Sequences: 438
Number of extensions: 1237
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)