Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14b17
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 228 7e-61
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 228 7e-61
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 155 4e-39
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 95 9e-21
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 42 9e-05
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 8.0
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 8.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.0
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 228 bits (557), Expect = 7e-61
Identities = 104/162 (64%), Positives = 120/162 (74%)
Frame = -2
Query: 697 LRGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 518
LR RFN DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+
Sbjct: 681 LRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAM 740
Query: 517 GGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 338
GG Y VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDH
Sbjct: 741 GGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDH 800
Query: 337 WQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 212
W + GDP +P SKP +V E RKRKGLKE +PD T+Y D+L
Sbjct: 801 WSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEYYDRL 842
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 228 bits (557), Expect = 7e-61
Identities = 104/162 (64%), Positives = 120/162 (74%)
Frame = -2
Query: 697 LRGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 518
LR RFN DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+
Sbjct: 681 LRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAM 740
Query: 517 GGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 338
GG Y VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDH
Sbjct: 741 GGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDH 800
Query: 337 WQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 212
W + GDP +P SKP +V E RKRKGLKE +PD T+Y D+L
Sbjct: 801 WSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEYYDRL 842
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 155 bits (377), Expect = 4e-39
Identities = 80/173 (46%), Positives = 108/173 (62%), Gaps = 12/173 (6%)
Frame = -2
Query: 697 LRGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 518
+R V F DV L + I+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E+ P ++
Sbjct: 797 IRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSL 856
Query: 517 GGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 338
Y +L RRRGHV ++ G+P+++V+A +PV +S GF DLR +T GQA Q VFDH
Sbjct: 857 PIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDH 916
Query: 337 WQVLPGDPCEPQSKP------------YNVVQETRKRKGLKEGLPDLTQYLDK 215
WQV+PGDP + KP + + +TR+RKGL E + T+Y D+
Sbjct: 917 WQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVEDV-STTRYFDQ 968
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 95.1 bits (226), Expect = 9e-21
Identities = 43/106 (40%), Positives = 63/106 (59%)
Frame = -2
Query: 631 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGXYGVLNRRRGHVFEESQVAG 452
GQ+I + + L PRLM +Y C++Q +G YGV+++RRG V +E G
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEG 900
Query: 451 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 314
TP FIVKA +PV ESFGF ++ T G A+PQ +F +++L +P
Sbjct: 901 TPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 41.9 bits (94), Expect = 9e-05
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = -2
Query: 586 LTAQPRLMEPVYLCEIQCPEVAVGGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 407
L A P ++EP+ I P GG G L++R+ + + F ++A +P+N
Sbjct: 668 LQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSM 725
Query: 406 FGFTADLRSNTGGQ 365
F +++D+R+ T G+
Sbjct: 726 FSYSSDIRALTKGK 739
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 340 HWQVLPGDPCEPQSKPYNVVQETRKRK 260
H+Q L GDP + PY VQ RK
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 97 SHLRVCFNMMRNM---CC*K*TCVKRFPYRYVF*FALTM 204
SH +C N + + C TC+ R YRY F F L++
Sbjct: 196 SHCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSV 234
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 8.0
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 360 KACPPVLERKSAVKPNDSLTGR*AFTMNIGVPATWD-SSKT*PRRLFSTPXIPPTATS 530
KA PP SA+ P G A + N G+PA + K L S P PP+ S
Sbjct: 1892 KAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMPNAPPSVAS 1949
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,696
Number of Sequences: 5004
Number of extensions: 62399
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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