Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14b17
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 224 5e-59
04_01_0103 + 1082077-1082167,1083037-1085477 222 2e-58
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 197 6e-51
01_06_0662 + 30987187-30987277,30987825-30990214 192 3e-49
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 156 1e-38
03_05_0511 + 25056018-25059107 99 4e-21
02_04_0148 - 20198407-20201424 94 8e-20
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 51 1e-06
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 47 2e-05
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 37 0.018
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 36 0.032
01_04_0109 + 16112581-16112934 32 0.39
04_01_0330 - 4369326-4370852 30 2.1
09_06_0142 - 21107878-21109104 28 6.3
01_05_0790 + 25253363-25254136,25259037-25259897 28 8.4
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 224 bits (548), Expect = 5e-59
Identities = 102/162 (62%), Positives = 125/162 (77%)
Frame = -2
Query: 697 LRGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 518
+RG+ F DV LH DAIHRGGGQ+IPT RR +YA LTA+PRL+EPVYL EIQ PE A+
Sbjct: 682 MRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPENAL 741
Query: 517 GGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 338
GG YGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDH
Sbjct: 742 GGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDH 801
Query: 337 WQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 212
W ++ DP E S+ +VQ+ RKRKGLKE + L+ + DKL
Sbjct: 802 WDMMTSDPLEAGSQASTLVQDIRKRKGLKEQMTPLSDFEDKL 843
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 222 bits (542), Expect = 2e-58
Identities = 101/162 (62%), Positives = 124/162 (76%)
Frame = -2
Query: 697 LRGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 518
+RG+ F DV LH DAIHRGGGQ+IPT RR +YA LTA+PRL+EPVYL EIQ PE A+
Sbjct: 682 MRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPENAL 741
Query: 517 GGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 338
GG YGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDH
Sbjct: 742 GGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDH 801
Query: 337 WQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 212
W ++ DP E S+ +V + RKRKGLKE + L+ + DKL
Sbjct: 802 WDMMTSDPLEVSSQANQLVLDIRKRKGLKEQMTPLSDFEDKL 843
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 197 bits (481), Expect = 6e-51
Identities = 91/162 (56%), Positives = 114/162 (70%)
Frame = -2
Query: 697 LRGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 518
+RGV F DVTLH D+IHRGGGQ+IPT RR +YA LTA PRLMEP+Y +IQ P+ AV
Sbjct: 692 MRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYAAQLTASPRLMEPMYQVDIQVPKTAV 751
Query: 517 GGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 338
G YGVLN R G + EES+ GTP+ ++ YLPV +SF FT LR+ T GQAFPQC+F H
Sbjct: 752 GNVYGVLNSRNGELVEESERTGTPLSNLRFYLPVAKSFDFTEKLRAETSGQAFPQCIFHH 811
Query: 337 WQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 212
WQ + DP + S+ V+ + RKRKGLK+ + L+ Y DKL
Sbjct: 812 WQTMRSDPFQEGSEAAKVITDIRKRKGLKDIITPLSDYEDKL 853
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 192 bits (467), Expect = 3e-49
Identities = 88/133 (66%), Positives = 104/133 (78%)
Frame = -2
Query: 694 RGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVG 515
RG+ F DV LH DAIHRGGGQIIPT RR +YA LTA+PRL+EPVYL EIQ PE A+G
Sbjct: 681 RGICFEVCDVILHSDAIHRGGGQIIPTARRVIYAAQLTAKPRLLEPVYLVEIQAPENALG 740
Query: 514 GXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHW 335
G Y VLN++RGHVFEE Q GTP++ +KAYLPV ESFGFT+ LR+ T GQAFP VFDHW
Sbjct: 741 GIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFTSTLRAATSGQAFPLFVFDHW 800
Query: 334 QVLPGDPCEPQSK 296
++L DP EP ++
Sbjct: 801 EMLSVDPLEPGTR 813
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 156 bits (379), Expect = 1e-38
Identities = 81/173 (46%), Positives = 107/173 (61%), Gaps = 12/173 (6%)
Frame = -2
Query: 697 LRGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 518
+R V+F + + + +HRGGGQIIPT RR +Y+ L A PRLMEPVY EIQ P V
Sbjct: 808 IRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYSAFLMANPRLMEPVYYIEIQTPIDCV 867
Query: 517 GGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 338
Y VL+RRRGHV + GTP+++VKA+LPV ESFGF DLR +T GQAF VFDH
Sbjct: 868 SAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDH 927
Query: 337 WQVLPGD---------PCEP---QSKPYNVVQETRKRKGLKEGLPDLTQYLDK 215
W ++PGD P EP Q + +TR+RKG+ E + + ++ D+
Sbjct: 928 WAIVPGDPLDKNIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDV-SINKFFDE 979
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 98.7 bits (235), Expect = 4e-21
Identities = 46/119 (38%), Positives = 65/119 (54%)
Frame = -2
Query: 670 DVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGXYGVLNR 491
D H + + GQ+I + ++ +PRL+E +Y CE+ P +G Y VL+R
Sbjct: 854 DAANHSEQYNIFSGQVITAVKEACREAVVQNKPRLVEAMYFCELTTPTEQLGATYAVLSR 913
Query: 490 RRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 314
+R V +E GT +F V AYLPV ES GF+ +LRS T G A V HW+ +P DP
Sbjct: 914 KRARVLKEEMQEGTSLFTVHAYLPVAESVGFSNELRSVTAGAASALLVLSHWEAIPEDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 94.3 bits (224), Expect = 8e-20
Identities = 45/106 (42%), Positives = 58/106 (54%)
Frame = -2
Query: 631 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGXYGVLNRRRGHVFEESQVAG 452
GQII R A +L ++PRL+EP+Y CE+ P +G Y VL R V +E G
Sbjct: 843 GQIITAVREACQAAILESKPRLVEPMYFCELTTPTEQLGSMYAVLGNCRARVLKEEMQEG 902
Query: 451 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 314
T +F V AYL V ES F+ LR+ T G A F HW+ +P DP
Sbjct: 903 TSLFTVHAYLSVAESSEFSKKLRNATAGAASALLAFSHWETVPQDP 948
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 50.8 bits (116), Expect = 1e-06
Identities = 31/89 (34%), Positives = 45/89 (50%)
Frame = -2
Query: 589 LLTAQPRLMEPVYLCEIQCPEVAVGGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNE 410
L A PRL+EP+ E+ PE +G G LN RRG V G + +V A++P+ E
Sbjct: 644 LRKAGPRLLEPIMKVEVITPEEHLGDVIGDLNSRRGQVNSFGDKPG-GLKVVDAFVPLAE 702
Query: 409 SFGFTADLRSNTGGQAFPQCVFDHWQVLP 323
F + + LR T G+A + V+P
Sbjct: 703 MFQYVSTLRGMTKGRASYTMQLAKFDVVP 731
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = -2
Query: 592 CLLTAQPRLMEPVYLCEIQCPEVAVGGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 413
C A+P ++EPV E++ P G G +N+R+G + Q +V ++P+N
Sbjct: 665 CYAAARPVILEPVMKVELKVPTEFQGTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLN 722
Query: 412 ESFGFTADLRSNTGGQ 365
FG++ LRS T G+
Sbjct: 723 NMFGYSTALRSMTQGK 738
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 411 SRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD 256
S S +P +P P D PS+ +T G S+ +N SP+ +Y K G D
Sbjct: 19 STSARVPGVIPKPIDLPSQRGTATQGDKSMPPASNAWGSPSVMYPKNGGGSD 70
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/89 (22%), Positives = 37/89 (41%)
Frame = -2
Query: 583 TAQPRLMEPVYLCEIQCPEVAVGGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 404
T +L EP + ++ PE +G +L +RRG + + ++K +P
Sbjct: 497 TVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLI 556
Query: 403 GFTADLRSNTGGQAFPQCVFDHWQVLPGD 317
G + + + G A +FD + GD
Sbjct: 557 GLRNAVLTASRGTAILNTIFDSYGPWAGD 585
>01_04_0109 + 16112581-16112934
Length = 117
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -3
Query: 414 MSRSVLLP--ICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGK 259
M+ VL P + +P+PA R R+ +T R++ +++ R PTT +R +G+
Sbjct: 1 MATEVLRPHNVLLPSPAQRRIRATAATHQRTANNHQSDARTKPTTAGSRRRQGR 54
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 615 VGMIWPPPLWMASXWSVTS 671
+G IWPPP+W S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>09_06_0142 - 21107878-21109104
Length = 408
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 290 VGLALRFARVSREDLPMVEYALREGLS-AGVGTQIGSKTER 409
V L L++ E LP++ A REG++ AGV +GS R
Sbjct: 171 VDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASR 211
>01_05_0790 + 25253363-25254136,25259037-25259897
Length = 544
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 589 LLTAQPRLMEPVYLCEIQCPEVAVGGXYGVLNRRRGHVF 473
++T PR+M +L E +V VGG V+ RG F
Sbjct: 168 VVTGAPRVMVEWFLKEYMAADVVVGGELHVVRVGRGRYF 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,784,839
Number of Sequences: 37544
Number of extensions: 434204
Number of successful extensions: 1106
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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