Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14b17
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 292 1e-79
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 292 1e-79
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 147 8e-36
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 147 8e-36
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 69 3e-12
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 2e-05
Z82055-6|CAB04851.1| 365|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 34 0.11
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 4.3
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 28 5.7
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 27 9.9
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 292 bits (717), Expect = 1e-79
Identities = 132/162 (81%), Positives = 143/162 (88%)
Frame = -2
Query: 697 LRGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 518
+RGVRFN +DVTLH DAIHRGGGQIIPT RR YA +LTA+PRL+EPVYL EIQCPE AV
Sbjct: 691 MRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAV 750
Query: 517 GGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 338
GG YGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH
Sbjct: 751 GGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 810
Query: 337 WQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 212
WQVLPGDP E +KP +V +TRKRKGLKEG+P L YLDK+
Sbjct: 811 WQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVPALDNYLDKM 852
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 292 bits (717), Expect = 1e-79
Identities = 132/162 (81%), Positives = 143/162 (88%)
Frame = -2
Query: 697 LRGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 518
+RGVRFN +DVTLH DAIHRGGGQIIPT RR YA +LTA+PRL+EPVYL EIQCPE AV
Sbjct: 691 MRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAV 750
Query: 517 GGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 338
GG YGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH
Sbjct: 751 GGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 810
Query: 337 WQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 212
WQVLPGDP E +KP +V +TRKRKGLKEG+P L YLDK+
Sbjct: 811 WQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVPALDNYLDKM 852
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 147 bits (356), Expect = 8e-36
Identities = 72/162 (44%), Positives = 98/162 (60%), Gaps = 12/162 (7%)
Frame = -2
Query: 697 LRGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 518
+R V+F D + + ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P V
Sbjct: 788 IRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCV 847
Query: 517 GGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 338
Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR +T GQAF F H
Sbjct: 848 AAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHH 907
Query: 337 WQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 248
WQ++PGDP + Q P+ + +TR+RKGL E
Sbjct: 908 WQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 949
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 147 bits (356), Expect = 8e-36
Identities = 72/162 (44%), Positives = 98/162 (60%), Gaps = 12/162 (7%)
Frame = -2
Query: 697 LRGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 518
+R V+F D + + ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P V
Sbjct: 663 IRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCV 722
Query: 517 GGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 338
Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR +T GQAF F H
Sbjct: 723 AAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHH 782
Query: 337 WQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 248
WQ++PGDP + Q P+ + +TR+RKGL E
Sbjct: 783 WQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 824
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 68.9 bits (161), Expect = 3e-12
Identities = 37/107 (34%), Positives = 52/107 (48%)
Frame = -2
Query: 634 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGXYGVLNRRRGHVFEESQVA 455
GGQ++ + A RL+ +Y C + A+G + VL++R+ V E
Sbjct: 732 GGQMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINE 791
Query: 454 GTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 314
T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 792 ATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 838
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/55 (43%), Positives = 28/55 (50%)
Frame = -2
Query: 478 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 314
V E T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z82055-6|CAB04851.1| 365|Caenorhabditis elegans Hypothetical
protein T26H2.6 protein.
Length = 365
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Frame = -1
Query: 296 ALQRCTGNEKEERIE-----GRSPRLNSIFGQIVNYIVKAN*NTYLYGKRFT-----HVY 147
A++ NEK ER+ G + LNS+FG +V I+ TY + T H+Y
Sbjct: 188 AVEYFVRNEKNERVLNYLSIGTALTLNSVFGAMVIVIIYCGVKTYKVTHKTTSHLSSHMY 247
Query: 146 FQQHMFRIMLKQT 108
Q+ +F +L QT
Sbjct: 248 IQKQLFTALLVQT 260
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.9 bits (74), Expect = 0.11
Identities = 28/114 (24%), Positives = 47/114 (41%)
Frame = -2
Query: 706 KRILRGVRFNXYDVTLHXDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPE 527
K + G+ D + H A+ +I T + + A L+EP+ E P
Sbjct: 598 KSRIAGIHVRIQDGSTH--AVDSTEIAMINTMQNMMRESFEKANWLLLEPIMKVEATVPT 655
Query: 526 VAVGGXYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 365
G L +R + G I +A P+++ FG+T++LRS T G+
Sbjct: 656 EFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELRSLTEGK 707
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 323 REDLPMVEYALREGLSAGVGTQIGSKTERLID 418
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Frame = -2
Query: 634 GGQIIPT-----TRRCLYACLLTAQPRLMEPVYLCEIQCP-EVAVGGXYGVLNRRRGHVF 473
GG+I P ++C+ L + + L EPV +I+ + L RRR H
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624
Query: 472 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 368
T + + A LP++E+ + +R+ T G
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRTLTSG 659
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 634 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGXYGVLNRR 488
G Q + T RCL A +L + +M + + + A G + ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,836,470
Number of Sequences: 27780
Number of extensions: 367473
Number of successful extensions: 830
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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