Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14b13
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical...    31   1.2  
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    28   6.2  
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical ...    28   8.2  
AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical
           protein Y38H6C.17 protein.
          Length = 454

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 481 ELVYSLWMFMIGQPPPFLARLILYSLFMP 567
           E +  +W F+ G PPPF   +++   F+P
Sbjct: 151 EHIIEIWQFIAGSPPPFSKIVLILMYFVP 179


>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
           protein K10E9.1 protein.
          Length = 1451

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 181 FALTYHPKDYKFNELLKYVQQLSVNQQRTE 270
           FAL Y  + Y+FN++ K + Q+  +Q+  E
Sbjct: 363 FALKYPDRSYEFNKMYKKLYQIMEDQEEDE 392


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical
           protein F37A4.4 protein.
          Length = 1163

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 463 FTNDSNELVYSLWMFMIGQPPPFLARLILYSLFMPT*DGSTILITS 600
           FT++      +L+++  G+   +  R   YSLFM   DG  +LI S
Sbjct: 787 FTSNGRNQYINLYLYYFGKTSDYEKRW-RYSLFMDRVDGKNVLIDS 831


>AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical
           protein F15E11.2 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 92  KGCFCKPMAGLSNGFSLNTTRLAKSCS 12
           KG +C+P + + NG   N+T L   C+
Sbjct: 218 KGKYCEPASAVENGKVCNSTSLTDGCT 244


>AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical
           protein F15E11.11 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 92  KGCFCKPMAGLSNGFSLNTTRLAKSCS 12
           KG +C+P + + NG   N+T L   C+
Sbjct: 251 KGKYCEPASAVENGKVCNSTSLTDGCT 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,142,978
Number of Sequences: 27780
Number of extensions: 316490
Number of successful extensions: 729
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)