Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14b11
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    29   0.13 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   2.1  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    24   6.5  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    23   8.6  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    23   8.6  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    23   8.6  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    23   8.6  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         23   8.6  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 271 VHGLSICQIMLYGYIVCFSYEFYYCYGFRMF 179
           VHGL  C ++LY Y  C S+ +YY Y +  F
Sbjct: 618 VHGL--CWVLLYYYQGCPSWTWYYPYHYAPF 646


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 77   LVKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPIT 199
            L+ + FKD+ +  + Y   ++ L + L +  + ++HS PIT
Sbjct: 1732 LLLMDFKDNDLVGVGYLRILSCLLVSLPAMVYTYEHSDPIT 1772


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 113 IIMYKAHINELNIKLLSTSFVFKHSKPITIVKLI 214
           I+ +KAH+N +NIK       F   +    +K++
Sbjct: 182 ILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMV 215


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
 Frame = -1

Query: 270 YTDYRYAK---SCYMVILFVSVMSFTIVMGLEC-LKTKLVDSSLMFNSFMCAL--YIMIA 109
           +TD  Y+    +C +  L V +M  T+    +      L    ++F++ +  +  YIMI 
Sbjct: 115 FTDVAYSMRLFTCLLGSLLVPLMYGTVYFPTKSKTAASLAALFVIFDNGLITMSRYIMIE 174

Query: 108 TVWSLKNNLTSFYASNLQSIQVVPFSYK 25
                  +LT+FY S  ++ Q  PFS +
Sbjct: 175 IPALYFMSLTAFYWSVYEAQQKRPFSLR 202


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 105 VWSLKNNLTSFYASNLQSIQVVPF 34
           VW+ ++ L SFY   +Q I+ + F
Sbjct: 179 VWAFESFLKSFYFKYIQIIEALSF 202


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 288 GHTMGAYTDYRYAKSCYMVILFVSVMSFTIVM 193
           GH M   TD  YA+ C   ++++   + T V+
Sbjct: 113 GHEMIFTTDDAYAEKCNDKVMYIDYKNITKVI 144


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 134 INELNIKLLSTSFVFKHSKPITIVKL 211
           I  +++ L   S V+KHS P+T ++L
Sbjct: 281 IRFMSLDLTKLSQVYKHSLPVTDMQL 306


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 93 KNNLTSFYASNLQSIQVVPFSYKRF 19
          KN L +   S+L SIQ +PFS + +
Sbjct: 18 KNFLLTIRFSSLVSIQYIPFSNRLY 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,175,693
Number of Sequences: 5004
Number of extensions: 19238
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)