Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14b11
(324 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical ... 32 0.11
Z83218-6|CAI58632.1| 273|Caenorhabditis elegans Hypothetical pr... 31 0.19
Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical p... 31 0.25
AC006675-10|AAK84551.2| 280|Caenorhabditis elegans Serpentine r... 29 0.77
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 28 1.8
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 28 1.8
AF016670-6|AAB66103.2| 839|Caenorhabditis elegans Hypothetical ... 28 1.8
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 27 3.1
U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein. 25 9.5
L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine t... 25 9.5
AF101318-11|ABA00165.1| 67|Caenorhabditis elegans Hypothetical... 25 9.5
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 25 9.5
AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated... 25 9.5
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ... 25 9.5
>AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical
protein Y22F5A.2 protein.
Length = 346
Score = 31.9 bits (69), Expect = 0.11
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -1
Query: 276 GAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCAL---YIMIAT 106
G DYRY + +IL + + F+I+M L + ++ F S + Y M+ T
Sbjct: 40 GMIDDYRYYLLYFQIILLIFDIYFSILMVPIPLFPVIGGYTIGFLSNFFGISTHYQMVFT 99
Query: 105 VWSLKNNLTSFYASNLQSIQVV 40
+W + N T + S L+ QVV
Sbjct: 100 LWCIGNTNTCIFISLLKRHQVV 121
>Z83218-6|CAI58632.1| 273|Caenorhabditis elegans Hypothetical
protein C31A11.10 protein.
Length = 273
Score = 31.1 bits (67), Expect = 0.19
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = -1
Query: 270 YTDYRY-AKSCYMVILFVSVMSFT--IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVW 100
Y +YR +C++ + ++S I+ G+ C ++D+ L +SF+CA+ T W
Sbjct: 115 YYNYRQNLLNCFVWFFIICIVSIDQYILFGV-C--DVVIDTPLDCDSFLCAMNQCYTTYW 171
Query: 99 SLKNNLTSFYASNLQSIQVVPF 34
L +T+F SN+ VV F
Sbjct: 172 LLHERITTF--SNVFFSAVVTF 191
>Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical
protein F10A3.8 protein.
Length = 337
Score = 30.7 bits (66), Expect = 0.25
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -1
Query: 246 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYA 67
SCY +I+ + + F KLV S+ F L I+ A+VW L N+L +
Sbjct: 100 SCYAIIISLITIHFYYRYLSVMFPVKLVRFSVRNLPFWILLVILNASVWFLLNSLVN-GP 158
Query: 66 SNLQSIQVVPFSYKR--FRRHPFS 1
S +Q ++P +R RH ++
Sbjct: 159 SEIQDAILIPEIRQRACLERHEYT 182
>AC006675-10|AAK84551.2| 280|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 57 protein.
Length = 280
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/77 (23%), Positives = 32/77 (41%)
Frame = -1
Query: 270 YTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLK 91
Y +R S Y+V+ F+S+ F L ++D + +F C + W +
Sbjct: 116 YHKHRNKISMYLVLFFISLFVFFDQFMLFGYCGNVIDVPVNCENFQCTVNQCYLQYWMVH 175
Query: 90 NNLTSFYASNLQSIQVV 40
+ F S+L +I V
Sbjct: 176 EQVVFFVISSLSTILFV 192
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 80 VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 190
+KL F D T I YK I LN+K+L + K K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 80 VKLFFKDHTVAIIMYKAHINELNIKLLSTSFVFKHSK 190
+KL F D T I YK I LN+K+L + K K
Sbjct: 1361 LKLQFDDFTAKINDYKTEIENLNMKVLRMGILEKSLK 1397
>AF016670-6|AAB66103.2| 839|Caenorhabditis elegans Hypothetical
protein K02F6.3 protein.
Length = 839
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 201 IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYASNLQSIQVVPFSYKR 22
++ LECLK K DSSL + I V + + T + + +Q + FS K+
Sbjct: 534 LITTLECLKDKKFDSSLASDLMKFGSNIRAFGVHAKNDKATISFLDQISKLQNLYFSVKK 593
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 98 DHTVAIIMY--KAHINELNIKLLSTSFVFKHSKPIT 199
D V +I Y ++ELN + +S S+VFK +K +T
Sbjct: 165 DALVGLITYGRMVQLHELNTQGISRSYVFKGTKEVT 200
>U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein.
Length = 532
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 246 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 148
+C+ + SVM I + C L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381
>L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine
transporter protein.
Length = 532
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 246 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 148
+C+ + SVM I + C L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381
>AF101318-11|ABA00165.1| 67|Caenorhabditis elegans Hypothetical
protein Y73C8C.12 protein.
Length = 67
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1
Query: 97 RPHCCNHNVQS 129
RPHCC +++QS
Sbjct: 47 RPHCCRYSIQS 57
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 105 VWSLKNNLTSFYASNLQSIQVVPFS 31
VWSL +FY+ L S+ +PFS
Sbjct: 16 VWSLAVLCLAFYSRRLSSLASLPFS 40
>AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated
protein 17, isoform a protein.
Length = 532
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 246 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 148
+C+ + SVM I + C L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381
>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
protein Y59E9AL.4 protein.
Length = 1100
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/73 (20%), Positives = 35/73 (47%)
Frame = -1
Query: 222 VSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYASNLQSIQV 43
++++ +++ + T SL + S + L +++ V+ L+N FY N + Q+
Sbjct: 152 ITIVPLMLLLTTSIVPTIEEKLSLHWISMVMLLVVVMMAVY-LENTRVPFYYYNTEKKQI 210
Query: 42 VPFSYKRFRRHPF 4
V + F + P+
Sbjct: 211 VSTKVRLFGQFPY 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,489,407
Number of Sequences: 27780
Number of extensions: 106011
Number of successful extensions: 319
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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