Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14b11
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   2.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   2.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   3.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   3.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   4.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   4.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   6.5  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -1

Query: 201 IVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWSLKNNLTSFYASNLQSIQVVPFSYKR 22
           IV+G   + T +  +S + NS     YI  + +W L    T F  + +     V   Y+R
Sbjct: 264 IVLGTNTILTFMTLASKVENSLPKVSYIKASEIWFL--GCTIFLFAAMVEFAFVNTIYRR 321

Query: 21  FRRHP 7
            +  P
Sbjct: 322 KKTVP 326


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +3

Query: 237 YNMIWHIDNP 266
           Y + WH+D P
Sbjct: 39  YELFWHVDQP 48


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +3

Query: 237 YNMIWHIDNP 266
           Y + WH+D P
Sbjct: 39  YELFWHVDQP 48


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 66  SNLQSIQVVPFSYKRFRRHP 7
           +NL  ++  P    RF+ HP
Sbjct: 523 NNLMKLETTPVLPSRFQSHP 542


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 129 ALYIMIATVWSLKNNLTSFY 70
           A+Y+++   WSL   +  FY
Sbjct: 243 AVYVLVNGSWSLPGFVCDFY 262


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 24  ACMKTEQLEYFV 59
           +C KT+Q+ YF+
Sbjct: 275 SCRKTDQILYFI 286


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 24  ACMKTEQLEYFV 59
           +C KT+Q+ YF+
Sbjct: 313 SCRKTDQILYFI 324


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -3

Query: 256 ICQIMLYGYIVCF 218
           I  ++L+G ++CF
Sbjct: 14  IINVLLHGQVICF 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,890
Number of Sequences: 438
Number of extensions: 1201
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)