Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14b08
(766 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P24647 Cluster: Immediate-early regulatory protein IE-N... 154 2e-36
UniRef50_P41708 Cluster: Uncharacterized 10.8 kDa protein in IEN... 105 2e-21
UniRef50_A1YRI1 Cluster: IE-2; n=1; Maruca vitrata MNPV|Rep: IE-... 73 1e-11
UniRef50_A1YRI2 Cluster: Mv-ORF120 peptide; n=1; Maruca vitrata ... 45 0.002
UniRef50_Q6VTJ5 Cluster: Putative uncharacterized protein; n=2; ... 42 0.017
UniRef50_A7RTY7 Cluster: Predicted protein; n=2; Nematostella ve... 38 0.21
UniRef50_UPI0000585D89 Cluster: PREDICTED: hypothetical protein;... 37 0.63
UniRef50_A1ZZP0 Cluster: Putative uncharacterized protein; n=1; ... 37 0.63
UniRef50_Q27022 Cluster: Spermatophorin SP23 precursor; n=1; Ten... 37 0.63
UniRef50_Q4UA71 Cluster: Spm1 homologue, putative; n=2; Theileri... 36 0.83
UniRef50_O06035 Cluster: EpsG; n=1; Lactococcus lactis subsp. cr... 35 2.5
UniRef50_UPI00006CD299 Cluster: hypothetical protein TTHERM_0026... 34 4.4
UniRef50_A5DVD6 Cluster: Putative uncharacterized protein; n=1; ... 34 4.4
UniRef50_UPI00006A2904 Cluster: UPI00006A2904 related cluster; n... 33 5.9
UniRef50_Q82U92 Cluster: General (Type II) secretion pathway (GS... 33 5.9
UniRef50_A7B596 Cluster: Putative uncharacterized protein; n=1; ... 33 7.8
UniRef50_A5EW81 Cluster: Putative uncharacterized protein; n=1; ... 33 7.8
UniRef50_Q45712 Cluster: Pesticidal crystal protein cry5Ba (Inse... 33 7.8
>UniRef50_P24647 Cluster: Immediate-early regulatory protein IE-N;
n=4; Nucleopolyhedrovirus|Rep: Immediate-early
regulatory protein IE-N - Autographa californica nuclear
polyhedrosis virus (AcMNPV)
Length = 408
Score = 154 bits (374), Expect = 2e-36
Identities = 79/102 (77%), Positives = 88/102 (86%), Gaps = 10/102 (9%)
Frame = +3
Query: 483 VSEDNVQIIGNANEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQEDDTI----ESVDR-- 644
VSE+NVQIIGN NEPLTRTYH QGVTY+VHGQVNISNDDPLLSQEDD I E+VDR
Sbjct: 61 VSEENVQIIGNVNEPLTRTYHRQGVTYYVHGQVNISNDDPLLSQEDDVILINSENVDRER 120
Query: 645 ----ASQQYQNSIASETAAQRALQRGLDLESQLMSEISPRSP 758
+QQYQ++IASETAAQRALQRGLDLE+QLM+EI+PRSP
Sbjct: 121 FPDITAQQYQDNIASETAAQRALQRGLDLEAQLMNEIAPRSP 162
>UniRef50_P41708 Cluster: Uncharacterized 10.8 kDa protein in
IEN-PE38 intergenic region; n=3;
Nucleopolyhedrovirus|Rep: Uncharacterized 10.8 kDa
protein in IEN-PE38 intergenic region - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 92
Score = 105 bits (251), Expect = 2e-21
Identities = 52/60 (86%), Positives = 53/60 (88%)
Frame = +2
Query: 44 YTVLYALNILLHYQLFCITKKFIFA*QVPLSLLSYQSYTTDKQYKYSDRSTRKHSSSLTA 223
YTV YA NILLHYQLFCITKKFIFA QVP LLSYQS +TDKQYKYS RSTRKHSSSLTA
Sbjct: 33 YTVRYAPNILLHYQLFCITKKFIFAWQVPPPLLSYQSCSTDKQYKYSCRSTRKHSSSLTA 92
>UniRef50_A1YRI1 Cluster: IE-2; n=1; Maruca vitrata MNPV|Rep: IE-2 -
Maruca vitrata MNPV
Length = 333
Score = 72.5 bits (170), Expect = 1e-11
Identities = 34/53 (64%), Positives = 41/53 (77%)
Frame = +3
Query: 498 VQIIGNANEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQEDDTIESVDRASQQ 656
VQ IGN NEPL RTYH QG+TY+VHGQVN+SNDDPL +ED + S D+ + Q
Sbjct: 42 VQTIGNINEPLMRTYHRQGITYNVHGQVNVSNDDPL--EEDIILISDDQNTTQ 92
>UniRef50_A1YRI2 Cluster: Mv-ORF120 peptide; n=1; Maruca vitrata
MNPV|Rep: Mv-ORF120 peptide - Maruca vitrata MNPV
Length = 61
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = +2
Query: 44 YTVLYALNILLHYQLFCITKKFIFA 118
YTVLYA NILLH QLFCITKK FA
Sbjct: 33 YTVLYAPNILLHNQLFCITKKLNFA 57
>UniRef50_Q6VTJ5 Cluster: Putative uncharacterized protein; n=2;
Nucleopolyhedrovirus|Rep: Putative uncharacterized
protein - Choristoneura fumiferana defective
polyhedrosis virus (Cfdef)
Length = 56
Score = 41.9 bits (94), Expect = 0.017
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = +1
Query: 43 LHCTIRSQYTTTLSTFLHYKKVH 111
LHC IRSQYTTT TFLH KVH
Sbjct: 33 LHCCIRSQYTTTHRTFLHCNKVH 55
>UniRef50_A7RTY7 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 172
Score = 38.3 bits (85), Expect = 0.21
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = -2
Query: 549 DYGTCASTARWRFR*SARCLR*HAAPDSAPDGDVCDCLNTVGCDCLNTVGCDCLKTVGCD 370
D C++T + + C + + + D C C NT C C NT C C T C
Sbjct: 82 DSCACSNTDSCAYSNTDSCACNNTDSCACSNTDSCACSNTDSCACSNTDSCACSNTDSCA 141
Query: 369 CLKT 358
C T
Sbjct: 142 CSNT 145
Score = 37.5 bits (83), Expect = 0.36
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 453 DVCDCLNTVGCDCLNTVGCDCLKTVGCDCLKT 358
D C C NT C C NT C C T C C T
Sbjct: 58 DSCACSNTDSCACSNTDSCACSNTDSCACSNT 89
Score = 37.5 bits (83), Expect = 0.36
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 453 DVCDCLNTVGCDCLNTVGCDCLKTVGCDCLKT 358
D C C NT C C NT C C T C C T
Sbjct: 122 DSCACSNTDSCACSNTDSCACSNTDSCACSNT 153
Score = 37.1 bits (82), Expect = 0.48
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 453 DVCDCLNTVGCDCLNTVGCDCLKTVGCDCLKT 358
D C C NT C C NT C C T C C T
Sbjct: 50 DSCACNNTDSCACSNTDSCACSNTDSCACSNT 81
Score = 37.1 bits (82), Expect = 0.48
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -2
Query: 453 DVCDCLNTVGCDCLNTVGCDCLKTVGCDCLKTAG 352
D C C NT C C NT C C T C C G
Sbjct: 130 DSCACSNTDSCACSNTDSCACSNTDSCACSNKRG 163
Score = 34.3 bits (75), Expect = 3.4
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = -2
Query: 549 DYGTCASTARWRFR*SARCLR*HAAPDSAPDGDVCDCLNTVGCDCLNTVGCDCLKTVGC 373
D C++T + + C + + + D C C NT C C NT C C T C
Sbjct: 34 DSCACSNTDSCAYSNTDSCACNNTDSCACSNTDSCACSNTDSCACSNTDSCACSNTDSC 92
Score = 33.1 bits (72), Expect = 7.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 453 DVCDCLNTVGCDCLNTVGCDCLKTVGC 373
D C C NT C C NT C C T C
Sbjct: 2 DSCACNNTDSCACSNTDSCACSNTDSC 28
Score = 33.1 bits (72), Expect = 7.8
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -2
Query: 453 DVCDCLNTVGCDCLNTVGCDCLKTVGCDCLKT 358
D C C NT C C NT C T C C T
Sbjct: 10 DSCACSNTDSCACSNTDSCAYSNTDSCACSNT 41
>UniRef50_UPI0000585D89 Cluster: PREDICTED: hypothetical protein;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 343
Score = 36.7 bits (81), Expect = 0.63
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 353 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ--TSPSG 463
P + Q QP ++Q QP + Q QP ++Q Q T P G
Sbjct: 44 PVAYPQGQPGAYQQGQPVAYPQGQPVAYQQGQPGTYPQG 82
Score = 35.9 bits (79), Expect = 1.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 353 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAESG 475
P + Q QP ++Q QP + Q QP ++Q Q P G G
Sbjct: 60 PVAYPQGQPVAYQQGQPGTYPQGQPVAYQQGQ--PVGYPQG 98
Score = 35.5 bits (78), Expect = 1.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 353 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 448
P ++Q QP + Q QP ++Q QP + Q Q
Sbjct: 36 PVAYQQGQPVAYPQGQPGAYQQGQPVAYPQGQ 67
Score = 35.5 bits (78), Expect = 1.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 353 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 448
P ++Q QP + Q QP ++Q QP + Q Q
Sbjct: 52 PGAYQQGQPVAYPQGQPVAYQQGQPGTYPQGQ 83
Score = 34.3 bits (75), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 353 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 448
P ++Q QP + Q QP ++Q QP + Q Q
Sbjct: 68 PVAYQQGQPGTYPQGQPVAYQQGQPVGYPQGQ 99
Score = 34.3 bits (75), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 353 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 448
P + Q QP ++Q QP + Q QP + Q Q
Sbjct: 76 PGTYPQGQPVAYQQGQPVGYPQGQPVAYPQGQ 107
Score = 34.3 bits (75), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 353 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 448
P ++Q QP + Q QP + Q QP + Q Q
Sbjct: 84 PVAYQQGQPVGYPQGQPVAYPQGQPVAYPQGQ 115
>UniRef50_A1ZZP0 Cluster: Putative uncharacterized protein; n=1;
Microscilla marina ATCC 23134|Rep: Putative
uncharacterized protein - Microscilla marina ATCC 23134
Length = 351
Score = 36.7 bits (81), Expect = 0.63
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 459 DGDVCDCLNTVGCDCLNTVGC--DCLKTVGCDCLK 361
DG C C N GC+C ++ C DC + GC+C K
Sbjct: 313 DGCDCHCCNCSGCNCCDSDCCNLDCCECDGCECRK 347
>UniRef50_Q27022 Cluster: Spermatophorin SP23 precursor; n=1;
Tenebrio molitor|Rep: Spermatophorin SP23 precursor -
Tenebrio molitor (Yellow mealworm)
Length = 182
Score = 36.7 bits (81), Expect = 0.63
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +2
Query: 353 PAVFKQSQPTVFKQSQPTVFKQS-QPTVFKQSQTSPSGAES 472
P +F+Q+ PT+++Q PT+ +Q+ QP+V K + P + S
Sbjct: 126 PPIFQQAPPTIYQQPSPTIIQQAPQPSVTKLVYSQPEPSHS 166
>UniRef50_Q4UA71 Cluster: Spm1 homologue, putative; n=2;
Theileria|Rep: Spm1 homologue, putative - Theileria
annulata
Length = 350
Score = 36.3 bits (80), Expect = 0.83
Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 5/52 (9%)
Frame = +2
Query: 335 YNISRSP-AVFKQSQPT--VFKQSQPTVFKQSQP--TVFKQSQTSPSGAESG 475
+N ++S ++F QSQP+ +F QS+P++F QSQP ++F Q+ S +G+ G
Sbjct: 65 FNSTQSTGSIFGQSQPSQSIFGQSKPSLFGQSQPSQSIFGQTSQSNTGSIFG 116
>UniRef50_O06035 Cluster: EpsG; n=1; Lactococcus lactis subsp.
cremoris|Rep: EpsG - Lactococcus lactis subsp. cremoris
(Streptococcus cremoris)
Length = 316
Score = 34.7 bits (76), Expect = 2.5
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = +1
Query: 7 LYKSVDYFIRIVLHCTIRSQYTTTLSTFLHYKKVHFCLTSSLITIVLSVV 156
LY+ +++F +IV H T S+ +T ++F+HY + +TS +L ++
Sbjct: 171 LYEDLNFFFKIVPHLTSISEVSTVKNSFVHYVQHKGTITSDNSLNILDII 220
>UniRef50_UPI00006CD299 Cluster: hypothetical protein
TTHERM_00266360; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00266360 - Tetrahymena
thermophila SB210
Length = 613
Score = 33.9 bits (74), Expect = 4.4
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +3
Query: 483 VSEDNVQIIGNANEPLTRTYHSQGVT------YHVHGQVNISNDDPLLSQEDDTI-ESVD 641
+S+D ++ N+ +RT QG + +++G+ N++ + S +I ES+
Sbjct: 393 ISQDQIKQNSNSQNQSSRTQQRQGSSKNNLKQQNLNGENNLNQQNSNFSNNSKSIQESIP 452
Query: 642 RASQQYQNSIASETAAQR 695
R SQQ+QN + + + R
Sbjct: 453 RGSQQFQNGLDNNSCQYR 470
>UniRef50_A5DVD6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 1505
Score = 33.9 bits (74), Expect = 4.4
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 341 ISRSPAVFKQSQPTVFKQSQPTVFKQSQPT 430
+ R P Q QPT + Q QPT + QSQPT
Sbjct: 406 LQRQPTGVLQQQPTGYLQQQPTGYLQSQPT 435
Score = 33.1 bits (72), Expect = 7.8
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2
Query: 368 QSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAESG 475
Q QPT Q QPT + Q QPT + QSQ + E G
Sbjct: 407 QRQPTGVLQQQPTGYLQQQPTGYLQSQPTGRPGEWG 442
>UniRef50_UPI00006A2904 Cluster: UPI00006A2904 related cluster; n=1;
Xenopus tropicalis|Rep: UPI00006A2904 UniRef100 entry -
Xenopus tropicalis
Length = 360
Score = 33.5 bits (73), Expect = 5.9
Identities = 10/40 (25%), Positives = 27/40 (67%)
Frame = +2
Query: 353 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAES 472
P + ++S+P + ++S+P + ++S+P + ++S+ +ES
Sbjct: 58 PYIIRESRPDIIRESRPDIIRESRPDIIRESRPDIIQSES 97
>UniRef50_Q82U92 Cluster: General (Type II) secretion pathway (GSP)
D protein; n=2; Nitrosomonas|Rep: General (Type II)
secretion pathway (GSP) D protein - Nitrosomonas
europaea
Length = 763
Score = 33.5 bits (73), Expect = 5.9
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -3
Query: 602 RIVIANVNLTVHVIRDTLTMVRARQRLVGVSD 507
R + N L + VIRDTL M+R +RLV ++D
Sbjct: 297 RDIYVNEKLNLFVIRDTLEMIRLVERLVAIND 328
>UniRef50_A7B596 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 562
Score = 33.1 bits (72), Expect = 7.8
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 501 QIIG--NANEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQEDDTIE 632
+I+G NAN P+ TY T ++ ++NI N+D L + D+ E
Sbjct: 65 KIVGSNNANLPVKATYEDNAYTRYLKERLNIQNEDVLEGENSDSYE 110
>UniRef50_A5EW81 Cluster: Putative uncharacterized protein; n=1;
Dichelobacter nodosus VCS1703A|Rep: Putative
uncharacterized protein - Dichelobacter nodosus (strain
VCS1703A)
Length = 584
Score = 33.1 bits (72), Expect = 7.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 456 GDVCDCLNTVGCDCLNTVGCDCLKTVGCDC 367
GD CDC C C++ CDC + DC
Sbjct: 77 GDSCDCDEENNCGCIDKHACDCNEEKDKDC 106
>UniRef50_Q45712 Cluster: Pesticidal crystal protein cry5Ba
(Insecticidal delta-endotoxin CryVB(a)); n=3;
Bacteria|Rep: Pesticidal crystal protein cry5Ba
(Insecticidal delta-endotoxin CryVB(a)) - Bacillus
thuringiensis
Length = 1245
Score = 33.1 bits (72), Expect = 7.8
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -2
Query: 447 CDCLNTVGCDCLNTVGCDCLKTVGCDCLKTAGL 349
CDC N V DC T C C CDC GL
Sbjct: 709 CDCNNPVDTDC--TFCCVCTSLTDCDCNNPRGL 739
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,249,889
Number of Sequences: 1657284
Number of extensions: 9539312
Number of successful extensions: 28100
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 25371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27794
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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