Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14b04
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    84   2e-17
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   0.71 
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    27   2.8  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   2.8  
AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore ...    27   2.8  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    27   2.8  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    27   3.8  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   5.0  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   5.0  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   5.0  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   6.6  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z79605-6|CAB01906.3|  323|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine r...    26   8.7  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 48/97 (49%), Positives = 54/97 (55%)
 Frame = -2

Query: 337 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 158
           MPPKKD K     P                            LNN VLFD+ TY+KLYKE
Sbjct: 1   MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKLYKE 57

Query: 157 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 47
           V  YKLITP+VVSERLKVR SLA+  L EL+ KGL+K
Sbjct: 58  VITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVK 94


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 326 EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 225
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 62
            protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 353  AFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRKS 222
            AFQ +++ QE        A  NT ++     + SQ  EVV ++S
Sbjct: 1077 AFQQENSPQEITYSMSNGAESNTSQQNESPLQNSQHSEVVSKQS 1120


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 72  SMSALLAREPRTFNLSDTTAGVISLYCG 155
           S++  ++ E   F+LSDT   ++ L+CG
Sbjct: 2   SVNRTISLENGKFDLSDTIVNIVELFCG 29


>AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform a protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 63  SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 200
           S++S+ AL A +    NL  TTA  + LY   S    S + + NN+
Sbjct: 313 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform b protein.
          Length = 1090

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 63  SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 200
           S++S+ AL A +    NL  TTA  + LY   S    S + + NN+
Sbjct: 228 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 205 NQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 92
           N +LFD+   EKL++++ +  +  P  V E+L +VR +L
Sbjct: 694 NCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 285 RRRRKDPVAAKPRRRSGP 232
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 285 RRRRKDPVAAKPRRRSGP 232
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
 Frame = +1

Query: 154 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 273
           GL    +  W  YQ    CS    TC   F W     W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +3

Query: 84  LLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPP 263
           ++ R+P ++    ++     + C  S   FS+V    +       R   L  F+F   PP
Sbjct: 340 IIRRQP-SYGSRSSSIATSQMRCDQSEIDFSWVNEEEDKLKRESKRIDSLPEFYFGMDPP 398

Query: 264 PDPS 275
           P PS
Sbjct: 399 PVPS 402


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 283 SVFFEAVWPKPSR 321
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 300 SLKKHRRRRKDPVAAKPRRRSGPKEK 223
           S  +  RRR+ P AA PRRR  P+ +
Sbjct: 473 SKSRSPRRRRSPAAA-PRRRQSPQRR 497


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 205 CSTCHELFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRP 324
           C    + F+     +  C   +LP+ S+  E   PKP RP
Sbjct: 44  CRMQDDCFIGEICDNGFCCPNVLPTFSLQREPTSPKPKRP 83


>Z79605-6|CAB01906.3|  323|Caenorhabditis elegans Hypothetical
           protein ZK678.4 protein.
          Length = 323

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 181 TYEKLYKEVPQYKLITP-AVVSERLKVRGSLARRALIELRE 62
           TYE + K   ++K ITP AV  +   +    ARR LI +R+
Sbjct: 184 TYEMIKKVFSKHKTITPFAVPLQNTTLSKLQARRDLIMMRQ 224


>AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine
           receptor, class t protein71 protein.
          Length = 365

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 60  FSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSR 221
           F L+    L   +P T N         +LYC  S +     G S ++WL+   R
Sbjct: 142 FLLNFQPELYECQPDTINNIVLVLCTSTLYCYISYHLLFNFGYSTSSWLYKSKR 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,278,752
Number of Sequences: 27780
Number of extensions: 172632
Number of successful extensions: 586
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)