Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14b03
         (581 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF364131-1|AAL35507.1|  378|Anopheles gambiae putative odorant r...    25   1.8  
Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    24   4.1  
AF020851-1|AAC31864.1|  214|Anopheles gambiae unknown protein.         23   5.5  
AF020850-1|AAC31863.1|  214|Anopheles gambiae unknown protein.         23   5.5  
AF020849-1|AAC31862.1|  214|Anopheles gambiae unknown protein.         23   5.5  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   9.5  

>AF364131-1|AAL35507.1|  378|Anopheles gambiae putative odorant
           receptor Or2 protein.
          Length = 378

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 275 TRHYCILLKLHLNYLYKFHRQVLQY*QVANS-CSHLSIL 388
           T H    L   L    K+H+Q++QY    NS  +HL +L
Sbjct: 219 TGHSAGTLFAELKECLKYHKQIIQYVHDLNSLVTHLCLL 257


>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 271 TYKTLLHLIKTSPK 312
           TY+T LH+IKT  K
Sbjct: 376 TYRTYLHMIKTKGK 389


>AF020851-1|AAC31864.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 373 PSVDTNKPLYS*PHFNLTSTDLPVRLLRNG 462
           P  ++NK ++  P  NLT ++  ++ LR G
Sbjct: 146 PCWESNKDVFPKPCGNLTDSEKEIQQLRGG 175


>AF020850-1|AAC31863.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 373 PSVDTNKPLYS*PHFNLTSTDLPVRLLRNG 462
           P  ++NK ++  P  NLT ++  ++ LR G
Sbjct: 146 PCWESNKDVFPKPCGNLTDSEKEIQQLRGG 175


>AF020849-1|AAC31862.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 373 PSVDTNKPLYS*PHFNLTSTDLPVRLLRNG 462
           P  ++NK ++  P  NLT ++  ++ LR G
Sbjct: 146 PCWESNKDVFPKPCGNLTDSEKEIQQLRGG 175


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 274  YKTLLHLIKTSPKLPVQ 324
            +K L HLI+  P+LP Q
Sbjct: 1940 FKLLRHLIRFVPRLPQQ 1956


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,414
Number of Sequences: 2352
Number of extensions: 8550
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55506924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)