Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14b02
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    28   0.084
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.4  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.6  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 28.3 bits (60), Expect = 0.084
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 482 IDGLSTEHNST-PSFSVNKMGSPGMLVSLVSVTTN 583
           +D +  EH +T P ++V ++  PG+ ++ + +TTN
Sbjct: 408 VDDVFQEHKNTLPQYTVQQLDFPGIEIADIKLTTN 442


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 339 QPDYDMDLSDFSITEVEATQYLTLLLIVE 253
           QP    D+SD+    +     LT+ LIVE
Sbjct: 363 QPSEGEDISDYKFRHITEITILTVQLIVE 391


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 771 LKIKLALSKYMAMLSTLEMTQPLLEI 694
           L ++ +++KY+  L  +E T+P+L I
Sbjct: 98  LNLRDSVTKYLIHLKEIEDTEPILLI 123


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -1

Query: 633 IHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILF 529
           +   +   +  +T K+EFVV +      P  P +F
Sbjct: 387 LETEWSSFINPWTKKLEFVVGQHRILKGPANPDIF 421


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -1

Query: 633 IHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILF 529
           +   +   +  +T K+EFVV +      P  P +F
Sbjct: 93  LETEWSSFINPWTKKLEFVVGQHRILKGPANPDIF 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,240
Number of Sequences: 438
Number of extensions: 4065
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)