Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14a24
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 275 3e-75
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 1.3
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 27 1.7
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 27 1.7
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 27 1.7
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.2
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 9.0
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 25 9.0
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 9.0
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 9.0
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 275 bits (675), Expect = 3e-75
Identities = 134/192 (69%), Positives = 156/192 (81%)
Frame = -2
Query: 630 EDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 451
E+GYSG EVRVTP RSEIII AT TQ VLGEKGRRIRELT++VQKRF E +VELYAEK
Sbjct: 33 EEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELYAEK 92
Query: 450 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 271
V RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKLR RAKSM
Sbjct: 93 VQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSM 152
Query: 270 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 91
KF DG MIHSG P D++++ATRHVLLRQGVLG+KVKIMLP + K KK PD ++V
Sbjct: 153 KFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVV 209
Query: 90 TEPKDEPVPLEP 55
+PK+E +P
Sbjct: 210 LDPKEEEPITKP 221
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 354 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 199
+ F ME + + ++ +L+ S K D ++I GD ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.0
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 570 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 394
MATR Q RR E + +QK +N + ++EL E+V G + + + RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783
Query: 393 IG 388
+G
Sbjct: 784 LG 785
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 289 STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 200
+ C + CR W P W+ + + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 452 FSAYNSTDCSGMLNRFCTTEVSSR 523
+ +Y S+DC G+L+R T+ R
Sbjct: 360 YPSYLSSDCKGLLSRMLVTDPLKR 383
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 291 GQRAKSMKFVDGLMIHSGDPCNDYVN 214
G+R K + F D H G P DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 9.0
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = +1
Query: 256 SIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKLVS*RFGLG--DS 429
S+Y + T+ LA+YN E I+ST S V R LG
Sbjct: 296 SVYSTMAYAEATSNLAKYNTIAFGNCLDEKFEEEIISSTARSFFLGDEVKKRLLLGAYSL 355
Query: 430 AKATSSHLFS 459
A+ SS LFS
Sbjct: 356 ARMNSSDLFS 365
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 392 ISLYLRDSAWAIAQRPRVATFSAYNSTDCSGMLNRFCTTEVSSRILRPFSPST 550
+ L L+ A+ ++ S+ +N F T SSR L PFS +T
Sbjct: 101 VRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,182
Number of Sequences: 5004
Number of extensions: 55202
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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