Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14a24
(631 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L13690-1|AAA28875.1| 246|Drosophila melanogaster ribosomal prot... 333 1e-91
BT024258-1|ABC86320.1| 253|Drosophila melanogaster IP15838p pro... 333 1e-91
AY118971-1|AAM50831.1| 246|Drosophila melanogaster LD47488p pro... 333 1e-91
AE014297-3319|AAF56129.1| 246|Drosophila melanogaster CG6779-PA... 333 1e-91
X72921-1|CAA51425.1| 246|Drosophila melanogaster ribosomal prot... 326 2e-89
AJ238847-1|CAB52798.1| 1301|Drosophila melanogaster drosophila d... 35 0.10
AF132179-1|AAD34767.1| 1301|Drosophila melanogaster unknown prot... 35 0.10
AE013599-2691|AAM68451.1| 1301|Drosophila melanogaster CG5170-PF... 35 0.10
AE013599-2690|AAM68450.1| 1301|Drosophila melanogaster CG5170-PE... 35 0.10
AE013599-2689|AAM68449.1| 1301|Drosophila melanogaster CG5170-PD... 35 0.10
AE013599-2688|AAF57691.2| 1301|Drosophila melanogaster CG5170-PC... 35 0.10
AE013599-2687|AAS64810.1| 1301|Drosophila melanogaster CG5170-PB... 35 0.10
AE013599-2686|AAS64809.1| 1301|Drosophila melanogaster CG5170-PA... 35 0.10
AE014297-610|AAF54020.1| 693|Drosophila melanogaster CG10101-PA... 29 6.9
M77166-1|AAA28528.1| 873|Drosophila melanogaster fasciclin II p... 28 9.1
M77165-1|AAA28527.1| 811|Drosophila melanogaster fasciclin II p... 28 9.1
BT014661-1|AAT27285.1| 773|Drosophila melanogaster GH15080p pro... 28 9.1
AL033125-2|CAA21826.1| 850|Drosophila melanogaster EG:EG0007.3,... 28 9.1
AL033125-1|CAA21825.1| 788|Drosophila melanogaster EG:EG0007.3,... 28 9.1
AE014298-607|AAN09119.1| 811|Drosophila melanogaster CG3665-PC,... 28 9.1
AE014298-606|AAN09118.1| 773|Drosophila melanogaster CG3665-PB,... 28 9.1
AE014298-605|AAF45925.2| 873|Drosophila melanogaster CG3665-PA,... 28 9.1
>L13690-1|AAA28875.1| 246|Drosophila melanogaster ribosomal protein
S3/AP endonucleaseDNA repair protein protein.
Length = 246
Score = 333 bits (819), Expect = 1e-91
Identities = 159/197 (80%), Positives = 175/197 (88%)
Frame = -2
Query: 630 EDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 451
EDGYSGVEVRVTP R+EIIIMAT+TQ VLGEKGRRIRELT++VQKRFN +ELYAEK
Sbjct: 33 EDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEK 92
Query: 450 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 271
VA RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGA+GCEVVVSGKLRGQRAKSM
Sbjct: 93 VAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSM 152
Query: 270 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 91
KFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D + K GPKKP PD++ V
Sbjct: 153 KFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSV 212
Query: 90 TEPKDEPVPLEPTSEVR 40
EPK+E + P +E +
Sbjct: 213 VEPKEEKIYETPETEYK 229
>BT024258-1|ABC86320.1| 253|Drosophila melanogaster IP15838p
protein.
Length = 253
Score = 333 bits (819), Expect = 1e-91
Identities = 159/197 (80%), Positives = 175/197 (88%)
Frame = -2
Query: 630 EDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 451
EDGYSGVEVRVTP R+EIIIMAT+TQ VLGEKGRRIRELT++VQKRFN +ELYAEK
Sbjct: 40 EDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEK 99
Query: 450 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 271
VA RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGA+GCEVVVSGKLRGQRAKSM
Sbjct: 100 VAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSM 159
Query: 270 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 91
KFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D + K GPKKP PD++ V
Sbjct: 160 KFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSV 219
Query: 90 TEPKDEPVPLEPTSEVR 40
EPK+E + P +E +
Sbjct: 220 VEPKEEKIYETPETEYK 236
>AY118971-1|AAM50831.1| 246|Drosophila melanogaster LD47488p
protein.
Length = 246
Score = 333 bits (819), Expect = 1e-91
Identities = 159/197 (80%), Positives = 175/197 (88%)
Frame = -2
Query: 630 EDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 451
EDGYSGVEVRVTP R+EIIIMAT+TQ VLGEKGRRIRELT++VQKRFN +ELYAEK
Sbjct: 33 EDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEK 92
Query: 450 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 271
VA RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGA+GCEVVVSGKLRGQRAKSM
Sbjct: 93 VAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSM 152
Query: 270 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 91
KFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D + K GPKKP PD++ V
Sbjct: 153 KFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSV 212
Query: 90 TEPKDEPVPLEPTSEVR 40
EPK+E + P +E +
Sbjct: 213 VEPKEEKIYETPETEYK 229
>AE014297-3319|AAF56129.1| 246|Drosophila melanogaster CG6779-PA
protein.
Length = 246
Score = 333 bits (819), Expect = 1e-91
Identities = 159/197 (80%), Positives = 175/197 (88%)
Frame = -2
Query: 630 EDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 451
EDGYSGVEVRVTP R+EIIIMAT+TQ VLGEKGRRIRELT++VQKRFN +ELYAEK
Sbjct: 33 EDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEK 92
Query: 450 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 271
VA RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGA+GCEVVVSGKLRGQRAKSM
Sbjct: 93 VAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSM 152
Query: 270 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 91
KFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D + K GPKKP PD++ V
Sbjct: 153 KFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSV 212
Query: 90 TEPKDEPVPLEPTSEVR 40
EPK+E + P +E +
Sbjct: 213 VEPKEEKIYETPETEYK 229
>X72921-1|CAA51425.1| 246|Drosophila melanogaster ribosomal protein
S3 protein.
Length = 246
Score = 326 bits (800), Expect = 2e-89
Identities = 156/197 (79%), Positives = 172/197 (87%)
Frame = -2
Query: 630 EDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 451
EDGYSGVEVRVTP +EIIIMAT+TQ VL EKGRRIRELT++VQKRFN +ELYAEK
Sbjct: 33 EDGYSGVEVRVTPFGTEIIIMATKTQQVLAEKGRRIRELTAMVQKRFNFETGRIELYAEK 92
Query: 450 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 271
VA RGLCAIAQAESLRYKL G LAVRRACYGVLR+IMESGA+GCEVVVSGKLRGQRAKSM
Sbjct: 93 VAARGLCAIAQAESLRYKLTGELAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSM 152
Query: 270 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 91
KFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D + K GPKKP PD++ V
Sbjct: 153 KFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSV 212
Query: 90 TEPKDEPVPLEPTSEVR 40
EPK+E + P +E +
Sbjct: 213 VEPKEEKIYETPETEYK 229
>AJ238847-1|CAB52798.1| 1301|Drosophila melanogaster drosophila
dodeca-satellite protein1 protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.10
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -2
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AF132179-1|AAD34767.1| 1301|Drosophila melanogaster unknown
protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.10
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -2
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE013599-2691|AAM68451.1| 1301|Drosophila melanogaster CG5170-PF,
isoform F protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.10
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -2
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE013599-2690|AAM68450.1| 1301|Drosophila melanogaster CG5170-PE,
isoform E protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.10
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -2
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE013599-2689|AAM68449.1| 1301|Drosophila melanogaster CG5170-PD,
isoform D protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.10
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -2
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE013599-2688|AAF57691.2| 1301|Drosophila melanogaster CG5170-PC,
isoform C protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.10
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -2
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE013599-2687|AAS64810.1| 1301|Drosophila melanogaster CG5170-PB,
isoform B protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.10
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -2
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE013599-2686|AAS64809.1| 1301|Drosophila melanogaster CG5170-PA,
isoform A protein.
Length = 1301
Score = 34.7 bits (76), Expect = 0.10
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -2
Query: 597 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 421
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 420 QAE 412
QAE
Sbjct: 225 QAE 227
>AE014297-610|AAF54020.1| 693|Drosophila melanogaster CG10101-PA
protein.
Length = 693
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 454 FSIQFYR--LLWNVESLLYYGSELTDSASFLSEHTL 555
+ +QFYR + N E L++YGS T SEH L
Sbjct: 103 YRVQFYRPEMSANFEDLMFYGSPRTAVLVLNSEHVL 138
>M77166-1|AAA28528.1| 873|Drosophila melanogaster fasciclin II
protein.
Length = 873
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 132 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 46
++ P++P+P H V K+EPV + P S+
Sbjct: 622 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 650
>M77165-1|AAA28527.1| 811|Drosophila melanogaster fasciclin II
protein.
Length = 811
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 132 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 46
++ P++P+P H V K+EPV + P S+
Sbjct: 622 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 650
>BT014661-1|AAT27285.1| 773|Drosophila melanogaster GH15080p
protein.
Length = 773
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 132 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 46
++ P++P+P H V K+EPV + P S+
Sbjct: 622 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 650
>AL033125-2|CAA21826.1| 850|Drosophila melanogaster
EG:EG0007.3,FBgn0000635;Fas2 protein.
Length = 850
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 132 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 46
++ P++P+P H V K+EPV + P S+
Sbjct: 599 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 627
>AL033125-1|CAA21825.1| 788|Drosophila melanogaster
EG:EG0007.3,FBgn0000635;Fas2 protein.
Length = 788
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 132 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 46
++ P++P+P H V K+EPV + P S+
Sbjct: 599 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 627
>AE014298-607|AAN09119.1| 811|Drosophila melanogaster CG3665-PC,
isoform C protein.
Length = 811
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 132 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 46
++ P++P+P H V K+EPV + P S+
Sbjct: 622 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 650
>AE014298-606|AAN09118.1| 773|Drosophila melanogaster CG3665-PB,
isoform B protein.
Length = 773
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 132 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 46
++ P++P+P H V K+EPV + P S+
Sbjct: 622 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 650
>AE014298-605|AAF45925.2| 873|Drosophila melanogaster CG3665-PA,
isoform A protein.
Length = 873
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 132 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 46
++ P++P+P H V K+EPV + P S+
Sbjct: 622 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 650
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,992,382
Number of Sequences: 53049
Number of extensions: 677836
Number of successful extensions: 3418
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3415
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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