Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14a24
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 318 3e-87
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 30 1.2
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 30 1.2
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 30 1.6
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 2.1
Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical p... 29 3.6
Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein... 29 3.6
U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein... 29 3.6
U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein... 29 3.6
U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein... 29 3.6
U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protei... 29 3.6
AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3 pr... 29 3.6
AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone prote... 29 3.6
AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone prote... 29 3.6
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 28 6.3
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 6.3
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 6.3
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 28 6.3
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 6.3
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical pr... 27 8.4
U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein... 27 8.4
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 318 bits (780), Expect = 3e-87
Identities = 148/195 (75%), Positives = 171/195 (87%)
Frame = -2
Query: 630 EDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 451
EDGYSGVEVR TP R+E+IIMATRTQ+VLGE+GRRI+ELTSVVQKRF E SVELYAEK
Sbjct: 33 EDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQKRFGFEEGSVELYAEK 92
Query: 450 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 271
V+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EV+VSGKLRGQRAK+M
Sbjct: 93 VSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKAM 152
Query: 270 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 91
KFVDGLMIHSG P NDY+ A RHV LRQGV+GIKVKIMLP+D +G+NGP+ PDH+ +
Sbjct: 153 KFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQI 212
Query: 90 TEPKDEPVPLEPTSE 46
EP++E +P EP S+
Sbjct: 213 VEPQEEVLPKEPHSQ 227
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -1
Query: 217 QHCYQTCASQTRSTRNQGQNHVA 149
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -1
Query: 217 QHCYQTCASQTRSTRNQGQNHVA 149
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 560 GHRVCSERKDAESVSSLP*YRSDSTFQSNL*NCMLKRWL 444
G R C+ KD ++ +S D+ FQ + NC+ K W+
Sbjct: 146 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWV 184
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 560 GHRVCSERKDAESVSSLP*YRSDSTFQSNL*NCMLKRWL 444
G R C+ KD ++ +S D+ FQ + NC+ K W+
Sbjct: 148 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWV 186
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -2
Query: 558 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 439
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical
protein T10C6.13 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.7 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.3 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.2 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical
protein F54E12.1 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical
protein F08G2.3 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical
protein B0035.10 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical
protein F22B3.2 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein 6
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein 17
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein 27
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protein
59 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone protein
32 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone protein
49 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 184 RSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPR 59
RSTR +G+ A QE+ E T+ H N+A+ R PR
Sbjct: 430 RSTRGRGRKSQANEENLQEKETEDPTKTHDTNQAKS-TRTPR 470
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 114 PQPDHILVTEPKDEPVPL---EPTSE 46
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 114 PQPDHILVTEPKDEPVPL---EPTSE 46
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 114 PQPDHILVTEPKDEPVPL---EPTSE 46
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 114 PQPDHILVTEPKDEPVPL---EPTSE 46
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 114 PQPDHILVTEPKDEPVPL---EPTSE 46
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -2
Query: 114 PQPDHILVTEPKDEPVPL---EPTSE 46
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 624 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 475
G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 547 GMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 624 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 475
G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 671 GMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 71 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 172
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 71 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 172
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical
protein Y49E10.6 protein.
Length = 136
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical
protein F40F8.1 protein.
Length = 191
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 1 SGDRLRQRRGREGAHFAGRLEGH 69
+GD LR R REG+ F +E H
Sbjct: 33 AGDLLRAERQREGSEFGALIESH 55
>U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein 71
protein.
Length = 136
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 451 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 347
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,155
Number of Sequences: 27780
Number of extensions: 326800
Number of successful extensions: 1131
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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