Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a23
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.13 
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    29   0.51 
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    29   0.68 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.68 
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    28   1.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    27   2.1  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    27   3.6  
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    26   4.8  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   4.8  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   8.4  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   8.4  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   8.4  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = +3

Query: 267 SASYTPLTLSVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTS 446
           SAS TPLT SV S     A           SA  +TST +S     +++ + LP+++++S
Sbjct: 369 SASSTPLT-SVNSTSATSAS-----STPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 422

Query: 447 VPLSNSS 467
            PLS+++
Sbjct: 423 TPLSSAN 429



 Score = 31.5 bits (68), Expect = 0.13
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = +3

Query: 267 SASYTPLTLSVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTS 446
           SAS TPLT SV S     A           SA  +TST +S     +++ + LP+++++S
Sbjct: 483 SASSTPLT-SVNSTSATSAS-----STPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 536

Query: 447 VPLSNSS 467
            PLS+++
Sbjct: 537 TPLSSAN 543


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 18/82 (21%), Positives = 37/82 (45%)
 Frame = +3

Query: 342 PASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGLPINLQV 521
           P+S  S FCS    +S+ C+++   T    + L  +   N +   F +  +  L      
Sbjct: 50  PSSDISEFCSLIDFISQTCNYYHDVTADFPSELIELLQKNHTIFPFELCEKIVL-----C 104

Query: 522 ILMFCPSTTLASLVILACTFPV 587
           +++    T ++ + +L C FP+
Sbjct: 105 LVLLKNKTVISPITLLQCFFPL 126


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 354 RSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLY---FHVTSEYGLPINLQ 518
           ++ FC    +    C  F+   R+PS  L  V  +  +FL    F ++ E  + INLQ
Sbjct: 12  KNVFCREDQIKKLSCLLFNKDCRVPSIVLYGVASTAKTFLLRTAFDLSKEENVWINLQ 69


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
 Frame = +3

Query: 267 SASYTPLTLSVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRP-----------CSFFSS 413
           S S T L++S +S     +      P+S  S+  S+ST+LS P            S  S 
Sbjct: 586 SPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISG 645

Query: 414 CTRLPSTALTSVPLSNSSFLY 476
            + + S++++++P+S+S   Y
Sbjct: 646 SSSILSSSISTIPISSSLSTY 666


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 502 KPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERAD 347
           KP+ +  WK KKD +D  T V    G   +L +N+  + + V  L+  +R +
Sbjct: 375 KPFEKQFWKIKKDLMD--TVVFFQKGKFYELYENDAAIGHQVFSLKLTDRVN 424


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 369  STSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTS-EYGLPINLQVILMFCPST 545
            ++STV++      SS T   ST +TS  + NSS      T+     PI    +L    ST
Sbjct: 3289 TSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLN--SST 3346

Query: 546  TLASLVILACTFPVTIQALI 605
             + S  IL  + PVT  +++
Sbjct: 3347 AITSSSILNSSTPVTSSSVL 3366



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +3

Query: 369  STSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGL----PINLQVILMFC 536
            ++STV++      SS     ST +TS  + NSS     +TS  GL    PI    +L   
Sbjct: 901  TSSTVVNSSTPITSSTALNTSTPITSSSVLNSS---TPITSSTGLNTSTPITSSSVLN-- 955

Query: 537  PSTTLASLVILACTFPVT 590
             ST + S  +L  + P+T
Sbjct: 956  SSTPITSSTVLNSSTPIT 973


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -1

Query: 565 MTKDANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSA-VLGSRVQLEKNEQGL 389
           +T +  +++ Q I      + +P+   +W    +E  +   +S  V+G R++L+K + GL
Sbjct: 108 VTGEGGLMDAQLITAEADNLTRPHW-TSWTENSEEFPSSLVMSTGVIGQRLKLDKIQSGL 166

Query: 388 DNTV 377
           ++ V
Sbjct: 167 EHAV 170


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/47 (21%), Positives = 21/47 (44%)
 Frame = -1

Query: 397 QGLDNTVLVLQNAERADAGLYQCSPAGGTPADVTLRVKGVYDALWPF 257
           + + NT+ + +N +  D        +    +D T  +K  ++  WPF
Sbjct: 28  ESVSNTISLSENGQNQDLETVTTKESNVGDSDTTENIKSPFNGQWPF 74


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 709 GTSSRXKGLTFQIKGRSNEDXYGNYTCGLKNQTGHIKAWMVTGNVHAKMTKD 554
           G S   KG+     G + E  Y N   GL+N  G    W + G + ++  KD
Sbjct: 44  GESLAIKGILLHSLGNTKEG-YDNVRLGLRNDVGSGVCWHIFGLI-SRADKD 93


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 300 TSAGVPPAGLHWYRPAS 350
           T A +PP GL WYR  S
Sbjct: 54  TKAKLPPFGLEWYRGCS 70


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 537 PSTTLASLVILACTFPVTIQALICPVW 617
           PST LAS  I +   P +I+  + P W
Sbjct: 294 PSTILASQTIFSEEHPSSIEPFVAPYW 320


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 282 PLTLSVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTA 437
           PL   ++ + VPP   H   P+ A     S  T  S+P   FSS + +P T+
Sbjct: 275 PLPSHLSQSNVPPQLSHSSVPSPAPPRSVSQPTYFSQPMPQFSS-SFVPGTS 325


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 474 YFHVTSEYG-LPINLQVILMFCPSTTLASLVILACTFPVTIQ--ALICPVWF 620
           Y HV S Y  + + L +I+    +    + V++A  F   I   + ICP+WF
Sbjct: 247 YIHVFSFYADMLMTLVLIISAYIALNAVASVVIAFVFLSLIFFISFICPIWF 298


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 625 LKNQTGHIKAWMVTGNVHAKMTKDANVVE 539
           +K    H +AW   G +H  +  ++ VVE
Sbjct: 321 VKENPQHFEAWKWLGRIHTLLGNESRVVE 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,947
Number of Sequences: 5004
Number of extensions: 33068
Number of successful extensions: 183
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)