Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14a23
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1379 - 26540012-26540587,26540804-26540995,26541777-265418... 31 1.2
08_02_0574 - 18867623-18868033,18869751-18870209 30 2.2
04_04_1654 - 35075409-35075926,35076396-35078694 29 2.9
08_02_0855 - 21913291-21913347,21914117-21914211,21915077-219151... 29 3.8
01_06_0918 + 32990106-32992196 29 3.8
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 3.8
03_05_0553 - 25499260-25499311,25499670-25499899 29 5.0
08_02_0405 + 16790720-16791691,16792064-16792135,16794487-167946... 28 6.6
02_02_0716 - 13264983-13265195,13265219-13265968,13266307-132664... 28 6.6
>08_02_1379 -
26540012-26540587,26540804-26540995,26541777-26541812,
26542255-26542488
Length = 345
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 418 VQLEKNEQGLDNTVLVLQNAERADAGLYQCSPAGGTPADVTLRVKGVYDALWPFLGICAE 239
+QLE+ QG D + L+ + A+ G D RVK + P + CA+
Sbjct: 83 LQLEEKNQGCDASALISSPNDDAEKDAPDNMSLAGDGFDTVNRVKTAVEKACPGVVSCAD 142
Query: 238 VVVLCA 221
++ L A
Sbjct: 143 ILALAA 148
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +3
Query: 294 SVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTA 437
SVT A +P AG ++ SA STST + C+ SS T LPST+
Sbjct: 82 SVTPAAIPCAG-----SSTTASAPTSTSTRAAPACTGRSSSTGLPSTS 124
>04_04_1654 - 35075409-35075926,35076396-35078694
Length = 938
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 345 ASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSS 467
AS R AF + ++ S P FFS T L +L PL+ SS
Sbjct: 109 ASLRHAFLNNNSFRSIPADFFSGLTSLLVISLDQNPLNVSS 149
>08_02_0855 -
21913291-21913347,21914117-21914211,21915077-21915165,
21915449-21915507,21917872-21918160,21918307-21918398,
21918495-21918621,21918730-21918811,21919265-21919541,
21919647-21919812,21920519-21920847
Length = 553
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 405 FSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGLPINLQVILMFC 536
FS +P+ LTS +Y+H +S YGL + L + C
Sbjct: 439 FSIDDTMPNPLLTSEKFIPIPIVYYHCSSSYGLSLRLLAQVNLC 482
>01_06_0918 + 32990106-32992196
Length = 696
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 268 LWPFLGICAEVVVLCA--VILFYEKRRTKPELDDSDTD 161
LW LG+C ++VL A V+ F + R EL D D D
Sbjct: 280 LWVVLGLCGLLLVLVAAGVLWFVSQWRKAGELADGDID 317
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Frame = -1
Query: 697 RXKGLTFQIKGRSNE------DXYGNYTCGLKNQTGHIKAW 593
+ +GL F+I+ +E D +G +T +K + H+KAW
Sbjct: 611 KIRGLAFEIEDAVDEFTYKLEDKHGGFTAKMKKRIKHVKAW 651
>03_05_0553 - 25499260-25499311,25499670-25499899
Length = 93
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 333 WYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYF 479
W+ A+A + + ++ R C SC RLP + +PL S +F
Sbjct: 12 WFALAAATAVLAGAAWLIIRACKADESCCRLPPGS-RGLPLLGESLEFF 59
>08_02_0405 +
16790720-16791691,16792064-16792135,16794487-16794621,
16794630-16794758
Length = 435
Score = 28.3 bits (60), Expect = 6.6
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = -1
Query: 496 YSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGL-DNTVLVLQNAERADAGLYQCSPA 320
Y++++ Y+ +L +GT V G+ + + K EQG+ D T + + E D G++ P
Sbjct: 306 YAQIS-VYRLADLISGTTVPDQ-GTFI-VSKGEQGMADETEVGIDGFEE-DGGIFLLRPG 361
Query: 319 GGTPADVTLRVKGVYDALWPFLGICAEVVVLCAVIL 212
G P L + Y G+ V++LC +L
Sbjct: 362 GVWPWMELLELALAYIVRLKTSGLITYVLLLCVGVL 397
>02_02_0716 -
13264983-13265195,13265219-13265968,13266307-13266463,
13266542-13266582
Length = 386
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 479 EVQEGRVGQRHGRERGAGQSRAAGE 405
E Q VG HGR+RG G+ + G+
Sbjct: 269 EAQANVVGNSHGRKRGHGEKKGKGK 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,242,153
Number of Sequences: 37544
Number of extensions: 249829
Number of successful extensions: 1044
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -