Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a23
         (730 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal ...    31   0.048
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    25   2.4  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    25   2.4  
AM042695-1|CAJ14970.1|  396|Anopheles gambiae 3-hydroxykynurenin...    23   9.7  

>CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal RNA
           adenine dimethylaseprotein.
          Length = 375

 Score = 30.7 bits (66), Expect = 0.048
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +3

Query: 318 PAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFL-YFHVTSE 494
           P+  HW     AR    S  T  S      +S   LPS  L SVPLS++ ++  F++ +E
Sbjct: 248 PSLEHWIPHCGARLILNSNYTRKSSSKKDPTSGV-LPSQLLKSVPLSSNDYVDNFNIFTE 306

Query: 495 YGLPINLQVILMF 533
           +G     QV+ +F
Sbjct: 307 FGELTPAQVLTLF 319


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
           phosphatase protein.
          Length = 1977

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 426 PSTALTSVPLSNSSFLYFHVTSEYGLPINLQVILMFCPSTT 548
           PS   TS+    ++    H  SE G P   Q I+   P+TT
Sbjct: 844 PSFTTTSISNGATTLQQQHAGSEAGHPYRFQPIVPELPTTT 884


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
           phosphatase protein.
          Length = 1978

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 426 PSTALTSVPLSNSSFLYFHVTSEYGLPINLQVILMFCPSTT 548
           PS   TS+    ++    H  SE G P   Q I+   P+TT
Sbjct: 843 PSFTTTSISNGATTLQQQHAGSEAGHPYRFQPIVPELPTTT 883


>AM042695-1|CAJ14970.1|  396|Anopheles gambiae 3-hydroxykynurenine
           transaminase protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 342 PASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTSE 494
           PAS R+       ++  P    S+C++   TA+T+  LSN     F    E
Sbjct: 7   PASLRNPLIIPEKIMMGPGP--SNCSKRVLTAMTNTVLSNFHAELFRTMDE 55


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,860
Number of Sequences: 2352
Number of extensions: 8753
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)