Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14a23
(730 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 40 2e-05
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 40 2e-05
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 38 1e-04
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 35 0.001
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 39.9 bits (89), Expect = 2e-05
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Frame = -1
Query: 643 GNYTCGLKNQTG---HIKAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYSEVTWKY 473
G Y+C +N+ G H V G + ++ V G+ +++ C + G P E+ W+
Sbjct: 495 GEYSCMAENRAGKVTHAARLNVYGLPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKWER 554
Query: 472 KKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQCS 326
EL + L +V D T+++ ++ DAG+Y CS
Sbjct: 555 ANRELPDD------LRQKVLP-------DGTLVITSVQKKGDAGVYTCS 590
Score = 29.1 bits (62), Expect = 0.045
Identities = 36/135 (26%), Positives = 52/135 (38%), Gaps = 7/135 (5%)
Frame = -1
Query: 712 SGTSSRXKGLTFQIKGRSNEDXYGNYTCGLKNQTGHIKA---WMVTGNVHAKMTKDANVV 542
SG +R G ++ + ED G Y C N G A +VT +H ++T V
Sbjct: 284 SGPRTRLLGSVLALEAVTLEDN-GIYRCSASNPGGEASAEIRLIVTAPLHVEVTPPLLSV 342
Query: 541 E-GQNIKITCKLIGKPYSE---VTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVL 374
G N + C++ P + +TW YK GT G + +L
Sbjct: 343 HLGGNAEFRCEVSTHPQAGPHFITW-YKDGRQLPGT-----------------GRQSELL 384
Query: 373 VLQNAERADAGLYQC 329
L R D G+YQC
Sbjct: 385 RLNGINREDRGMYQC 399
Score = 24.2 bits (50), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -1
Query: 382 TVLVLQNAERADAGLYQCS---PAGGTPADVTLRV 287
+VL L+ D G+Y+CS P G A++ L V
Sbjct: 293 SVLALEAVTLEDNGIYRCSASNPGGEASAEIRLIV 327
Score = 24.2 bits (50), Expect = 1.3
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Frame = -1
Query: 676 QIKGRSNEDXYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTK---DANVVEGQNIKITC 515
++ G + ED G Y C ++ G A + GN + + + G + + C
Sbjct: 385 RLNGINREDR-GMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKC 443
Query: 514 KLIGKPYSEVTW 479
G P +VTW
Sbjct: 444 SAAGNPTPQVTW 455
Score = 23.4 bits (48), Expect = 2.2
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = -1
Query: 442 VSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQCSPAGGTPADVT 296
+ + +G VQL+ N L ++ D C G TP VT
Sbjct: 792 IGSGIGKVVQLKVNSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVT 840
Score = 23.0 bits (47), Expect = 2.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 448 TDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQ 332
TDVS V L QG+ +V + A + +G Y+
Sbjct: 717 TDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYE 755
Score = 23.0 bits (47), Expect = 2.9
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Frame = -1
Query: 622 KNQTGHIKAWMVTGNVHAKMTK-DANVVEGQ--NIKITCKLIGKPYSEVTWKYKKDELDN 452
+ Q+ + A + T V A++T +VV + + C +G P E W YK
Sbjct: 1297 EGQSSKVAAQVPTNRVPARITSFGGHVVRPWRGSATLACNAVGDPTRE--W-YK----GQ 1349
Query: 451 GTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQC 329
G + R +N Q L + L+L N + D G Y C
Sbjct: 1350 GEQI------RTDSTRNIQILPSGELMLSNLQSQDGGDYTC 1384
Score = 22.6 bits (46), Expect = 3.9
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Frame = -1
Query: 643 GNYTCGLKNQTGHI-----KAWMVTGNVHAKMTKDANVVEGQNIKITCKL-IGKPYSEVT 482
G YTC +N+ GH ++ + T + EG + C + G P ++
Sbjct: 585 GVYTCSARNKQGHSARRSGDVAVIVPPIIEPFTFQEGLSEGMRTRTVCGVAAGDPPLTIS 644
Query: 481 W 479
W
Sbjct: 645 W 645
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 39.9 bits (89), Expect = 2e-05
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Frame = -1
Query: 643 GNYTCGLKNQTG---HIKAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYSEVTWKY 473
G Y+C +N+ G H V G + ++ V G+ +++ C + G P E+ W+
Sbjct: 495 GEYSCMAENRAGKVTHAARLNVYGLPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKWER 554
Query: 472 KKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQCS 326
EL + L +V D T+++ ++ DAG+Y CS
Sbjct: 555 ANRELPDD------LRQKVLP-------DGTLVITSVQKKGDAGVYTCS 590
Score = 29.1 bits (62), Expect = 0.045
Identities = 36/135 (26%), Positives = 52/135 (38%), Gaps = 7/135 (5%)
Frame = -1
Query: 712 SGTSSRXKGLTFQIKGRSNEDXYGNYTCGLKNQTGHIKA---WMVTGNVHAKMTKDANVV 542
SG +R G ++ + ED G Y C N G A +VT +H ++T V
Sbjct: 284 SGPRTRLLGSVLALEAVTLEDN-GIYRCSASNPGGEASAEIRLIVTAPLHVEVTPPLLSV 342
Query: 541 E-GQNIKITCKLIGKPYSE---VTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVL 374
G N + C++ P + +TW YK GT G + +L
Sbjct: 343 HLGGNAEFRCEVSTHPQAGPHFITW-YKDGRQLPGT-----------------GRQSELL 384
Query: 373 VLQNAERADAGLYQC 329
L R D G+YQC
Sbjct: 385 RLNGINREDRGMYQC 399
Score = 24.2 bits (50), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -1
Query: 382 TVLVLQNAERADAGLYQCS---PAGGTPADVTLRV 287
+VL L+ D G+Y+CS P G A++ L V
Sbjct: 293 SVLALEAVTLEDNGIYRCSASNPGGEASAEIRLIV 327
Score = 24.2 bits (50), Expect = 1.3
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Frame = -1
Query: 676 QIKGRSNEDXYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTK---DANVVEGQNIKITC 515
++ G + ED G Y C ++ G A + GN + + + G + + C
Sbjct: 385 RLNGINREDR-GMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKC 443
Query: 514 KLIGKPYSEVTW 479
G P +VTW
Sbjct: 444 SAAGNPTPQVTW 455
Score = 23.4 bits (48), Expect = 2.2
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Frame = -1
Query: 643 GNYTCGLKNQTGHI--KAWMVTGNVHAKM---TKDANVVEGQNIKITCKLI-GKPYSEVT 482
G YTC +N+ GH ++ V V K+ T D ++ G+ +TC + G ++
Sbjct: 585 GVYTCSARNKQGHSARRSGDVAVIVPPKISPFTADRDLHLGERTTLTCSVTRGDLPLSIS 644
Query: 481 WKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQC 329
W L +G + RV + +Q N++L++++ G Y C
Sbjct: 645 W------LKDGRAMGP--SERVHVTNMDQ--YNSILMIEHLSPDHNGNYSC 685
Score = 23.4 bits (48), Expect = 2.2
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = -1
Query: 442 VSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQCSPAGGTPADVT 296
+ + +G VQL+ N L ++ D C G TP VT
Sbjct: 788 IGSGIGKVVQLKVNSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVT 836
Score = 23.0 bits (47), Expect = 2.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 448 TDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQ 332
TDVS V L QG+ +V + A + +G Y+
Sbjct: 713 TDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYE 751
Score = 23.0 bits (47), Expect = 2.9
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Frame = -1
Query: 622 KNQTGHIKAWMVTGNVHAKMTK-DANVVEGQ--NIKITCKLIGKPYSEVTWKYKKDELDN 452
+ Q+ + A + T V A++T +VV + + C +G P E W YK
Sbjct: 1293 EGQSSKVAAQVPTNRVPARITSFGGHVVRPWRGSATLACNAVGDPTRE--W-YK----GQ 1345
Query: 451 GTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQC 329
G + R +N Q L + L+L N + D G Y C
Sbjct: 1346 GEQI------RTDSTRNIQILPSGELMLSNLQSQDGGDYTC 1380
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 37.5 bits (83), Expect = 1e-04
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Frame = -1
Query: 643 GNYTCGLKNQTGHIK-AWMVTGNVHAKMT---KDANVVEGQNIKITCKLIGKPYSEVTWK 476
G Y C +N G + +T NV + D +G + ++ CK G P +VTW
Sbjct: 654 GEYVCTAENAAGTASHSTTLTVNVPPRWILEPTDKAFAQGSDARVECKADGFPKPQVTW- 712
Query: 475 YKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQCSPAGGTPADVT 296
KK D D + ++L + +++ L + N ++ + G Y C G A ++
Sbjct: 713 -KKAAGDTPGDY-----TDLKLSNPDISVEDGTLSINNIQKTNEGYYLCEAVNGIGAGLS 766
Score = 33.9 bits (74), Expect = 0.002
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = -1
Query: 535 QNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAE 356
+++K+ C +G P EVTWK + AVL S +L + +G L ++ +
Sbjct: 1292 EDVKLPCLAVGVPAPEVTWKVR----------GAVLQSSDRLRQLPEG----SLFIKEVD 1337
Query: 355 RADAGLYQC 329
R DAG Y C
Sbjct: 1338 RTDAGEYSC 1346
Score = 30.7 bits (66), Expect = 0.015
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Frame = -1
Query: 565 MTKDANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLD 386
M K A +V G+ +++TC + G P + W + T V + + + ++
Sbjct: 497 MDKKA-IVAGETLRVTCPVAGYPIESIVW-------ERDTRV-------LPINRKQKVFP 541
Query: 385 NTVLVLQNAER-ADAGLYQC--SPAGGTPADVTLRVK 284
N L+++N ER +D Y C A G A TL V+
Sbjct: 542 NGTLIIENVERMSDQATYTCVARNAQGYSARGTLEVQ 578
Score = 28.7 bits (61), Expect = 0.059
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = -1
Query: 643 GNYTCGLKNQTG--HIKAWM-VTGNVHAKMTKDANVVE-GQNIKITCKLIGKPYSEVTWK 476
G Y C + N G ++ + VT + A++ ++ G+ TC + G P V+W
Sbjct: 283 GKYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTIDFGRPATFTCNVRGNPIKTVSW- 341
Query: 475 YKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQC 329
L +G + GL+ VL +++ ++ D G+YQC
Sbjct: 342 -----LKDGKPL---------------GLEEAVLRIESVKKEDKGMYQC 370
Score = 26.2 bits (55), Expect = 0.32
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Frame = -1
Query: 538 GQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNA 359
G ++ + C G P E+TW+ L N + +G V + G + L + +
Sbjct: 408 GPSMFLKCVASGNPTPEITWELDGKRLSNTERLQ--VGQYVTV----NGDVVSHLNISST 461
Query: 358 ERADAGLYQC---SPAGGTPADVTLRVKGV 278
D GLY+C S G L V G+
Sbjct: 462 HTNDGGLYKCIAASKVGSAEHSARLNVYGL 491
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 34.7 bits (76), Expect = 0.001
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
Frame = -1
Query: 643 GNYTCGLKNQTGHIKAWMVTGNV--HAKMTKDANVVE-GQNIKITCKLIGKPYSEVTWKY 473
GNYTC ++ ++T + K+T + I C + G+P V W
Sbjct: 378 GNYTCHAVRNQDVVQTHVLTIHTIPEVKVTPRFQAKRLKEEANIRCHVAGEPLPRVQW-L 436
Query: 472 KKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERADAGLYQC--SPAGGTPADV 299
K DE N Q +K + + T L+++N + AD G Y C S GG D+
Sbjct: 437 KNDEALNHD----------QPDKYDLIGNGTKLIIKNVDYADTGAYMCQASSIGGITRDI 486
Query: 298 T 296
+
Sbjct: 487 S 487
Score = 24.2 bits (50), Expect = 1.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 538 GQNIKITCKLIGKPYSEVTWKYKKDELD 455
G N++I C + G P + W+ +L+
Sbjct: 325 GDNVEIKCDVTGTPPPPLVWRRNGADLE 352
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,342
Number of Sequences: 438
Number of extensions: 2607
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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