Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14a20
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 118 7e-27
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 111 8e-25
06_03_0433 - 20718726-20719895 30 1.9
02_02_0470 - 10700092-10700505 30 2.5
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 29 3.3
10_08_0951 - 21769342-21769752 29 5.8
10_02_0100 + 5296783-5297568 28 7.7
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 118 bits (283), Expect = 7e-27
Identities = 79/179 (44%), Positives = 103/179 (57%), Gaps = 4/179 (2%)
Frame = -3
Query: 529 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 356
PT+ + +SS FS + + +R ++ GTV ILLAGR GKRVV + L SGLLLVT
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130
Query: 355 GPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDI 176
GPF N P+RR+ Q YVI TST++ + + K F+D YF EG ++
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG-EL 185
Query: 175 FATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLRSSQYPHRL 5
F T+KE K +P E +K DQK VD +IKAI A PD L+ YL A F LR PH +
Sbjct: 186 FETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD---LKTYLGARFSLRDGDKPHEM 240
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 111 bits (266), Expect = 8e-25
Identities = 81/196 (41%), Positives = 108/196 (55%), Gaps = 7/196 (3%)
Frame = -3
Query: 580 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 416
KNGGT K FYP + K RA S + + ++R + GTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87
Query: 415 HAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 236
+ GKRVV + L SGLLL+TGPF N P+RR+ Q YVI TST++ + K+ K F+D Y
Sbjct: 88 YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKY 146
Query: 235 FXXXXXXXXXXXXXKEGDDIFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKML 62
F EG ++F T+KE K +P + +K DQK VD +IKAI PD
Sbjct: 147 F---ARDKKAKAKKTEG-ELFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPD---- 197
Query: 61 RGYLKAAFGLRSSQYP 14
LK+ G R+S++P
Sbjct: 198 ---LKSYLGARNSRWP 210
>06_03_0433 - 20718726-20719895
Length = 389
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 167 KKREIRSI*AAQNRSEDSRRGCDQSHRSPTRQEDAPRIPQG 45
KK + S A+++ S+D++ G D H S T ++ +P G
Sbjct: 189 KKEAVDSQNASESLSDDAKGGTDDEHSSGTLPDETGNLPSG 229
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 454 LKIGTVCILLAGRHAGKRVVLVGILPSG 371
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 321 AFLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 196
AFL+ + PP + H C N S++I R + N QSN
Sbjct: 544 AFLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 454 LKIGTVCILLAGRHAGKRVVLVGILPSG 371
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>10_02_0100 + 5296783-5297568
Length = 261
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 111 TRL*SKPSEPDPTRRCSADTSRRPSDSARANIP 13
TR SKP P PT+ SA + +D A A+ P
Sbjct: 142 TRSSSKPPAPAPTKTASASDHAKKTDMAAAHKP 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,284,181
Number of Sequences: 37544
Number of extensions: 510398
Number of successful extensions: 1380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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