Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a19
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    25   2.3  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    23   9.2  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    23   9.2  

>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -1

Query: 120 QSGSSHHIKMWWALVLTLHQ*IPALVQTF--PPT 25
           Q+G  HH+   W   L  H+   A++  F  PP+
Sbjct: 215 QNGKPHHLASSWEFALLQHKKFTAIMMQFKTPPS 248


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 192  SLKYLLHPNLKIITQCFPRLSFR 260
            SLKYLL    K+IT+ F   S R
Sbjct: 957  SLKYLLDDFTKVITKTFSIKSIR 979


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 102 DDLIHSAISSLNP 140
           D+LIHS I+S NP
Sbjct: 485 DELIHSPIASTNP 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,134
Number of Sequences: 5004
Number of extensions: 23144
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)