Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a19
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325...    26   6.4  
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302...    26   8.5  
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731...    26   8.5  

>01_01_0429 +
           3254291-3254435,3254902-3255210,3255286-3256747,
           3256950-3257577
          Length = 847

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 57  IPALVQTFPPTKFSCT 10
           IPALVQT PP    CT
Sbjct: 805 IPALVQTLPPLTRRCT 820


>12_01_0386 +
           3023431-3023522,3023951-3024097,3024227-3024308,
           3024801-3024842,3024930-3024989,3025430-3027109,
           3027239-3027340,3027461-3027604,3027704-3027829,
           3027933-3028100
          Length = 880

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 102 DDLIHSAISSLNPGKFKVSCASVNPKYCLVSLKYLLHPNLKIITQC 239
           D L+ + IS++NPG  ++S  S + K  L  +    +   K   QC
Sbjct: 545 DQLLDAVISNVNPGGKQISGDSASCKTSLTDIPSTSYCGSKETKQC 590


>03_05_0926 +
           28871800-28871859,28871943-28872336,28872586-28873199,
           28873281-28873346
          Length = 377

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 218 FENYNTMFS*IVIQKVIQMMLIQHKTGIAINNGTHIHY 331
           FE +NT    + IQ V+ +      TGI +++G  + +
Sbjct: 126 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,686,530
Number of Sequences: 37544
Number of extensions: 138805
Number of successful extensions: 301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)