Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a19
         (333 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033066-1|AAH33066.1|  539|Homo sapiens F-box and leucine-rich ...    29   3.4  
AF174592-1|AAF04513.1|  283|Homo sapiens F-box protein Fbl6 prot...    29   3.4  
AY970432-1|AAX82241.1|  103|Homo sapiens actin-like protein prot...    28   6.0  

>BC033066-1|AAH33066.1|  539|Homo sapiens F-box and leucine-rich
           repeat protein 6 protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 186 LVSLKYLLHPNLKIITQCFPRLSF 257
           L+  K  +HP LK++ +C PRL+F
Sbjct: 201 LIHWKSQVHPVLKLVGECCPRLTF 224


>AF174592-1|AAF04513.1|  283|Homo sapiens F-box protein Fbl6
           protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 186 LVSLKYLLHPNLKIITQCFPRLSF 257
           L+  K  +HP LK++ +C PRL+F
Sbjct: 112 LIHWKSQVHPVLKLVGECCPRLTF 135


>AY970432-1|AAX82241.1|  103|Homo sapiens actin-like protein
           protein.
          Length = 103

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 218 FENYNTMFS*IVIQKVIQMMLIQHKTGIAINNG 316
           FE +NT    + IQ V+ +    H TGI +++G
Sbjct: 41  FETFNTPAMYVAIQAVLSLYTSGHTTGIVMDSG 73


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,602,804
Number of Sequences: 237096
Number of extensions: 860554
Number of successful extensions: 1157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1736741460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)