Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a19
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   1.9  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   1.9  
Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    26   5.7  
AC024817-41|AAY86306.1|  152|Caenorhabditis elegans Hypothetical...    26   5.7  
Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z81577-3|CAB04649.1|  528|Caenorhabditis elegans Hypothetical pr...    25   10.0 
X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.        25   10.0 

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 168 VNPKYCLVSLKYLLHPNLKIITQCFPRLS 254
           VN K C+ S+ YLL  + KI+   FP ++
Sbjct: 706 VNGKRCIDSIDYLLFSSNKIVRGIFPEIN 734


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 168 VNPKYCLVSLKYLLHPNLKIITQCFPRLS 254
           VN K C+ S+ YLL  + KI+   FP ++
Sbjct: 706 VNGKRCIDSIDYLLFSSNKIVRGIFPEIN 734


>Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical
           protein F27C8.5 protein.
          Length = 565

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 178 LGLTEAQDTLNFPGLSEEIAEWIKSSYK 95
           +G +  Q T+ +PG S+++ E  K  YK
Sbjct: 364 MGFSSVQCTVKYPGWSKDVMETNKEMYK 391


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
           protein W03F11.4 protein.
          Length = 1406

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -3

Query: 232 VIIFKFGWSKYFNETKQYLGLTEAQDTLNFPGLSEEIAEWIKSSYKN 92
           V+I K      FNETK+YL L ++ D  +  G    I+++I S+++N
Sbjct: 508 VVIKKMIEEPTFNETKEYLKLLQS-DLASLSGSIGSISKFI-STFEN 552


>AC024817-41|AAY86306.1|  152|Caenorhabditis elegans Hypothetical
           protein Y54G2A.50 protein.
          Length = 152

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 241 KHCVIIFKFGWSKYFNETK--QYLGLTEAQDTLNFP-GLS 131
           K C I+F FG+ + F + +   YL   +  D   FP GLS
Sbjct: 111 KQCFIVFIFGFERRFGDGRHCHYLNDKKRTDLRTFPSGLS 150


>Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.5 protein.
          Length = 376

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 218 FENYNTMFS*IVIQKVIQMMLIQHKTGIAINNG 316
           FE +NT    + IQ V+ +      TGI +++G
Sbjct: 125 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 157


>Z81577-3|CAB04649.1|  528|Caenorhabditis elegans Hypothetical
           protein R11.3 protein.
          Length = 528

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 132 LNPGKFKVSCASVNPKYCL 188
           LNP +FK++C   N  YCL
Sbjct: 509 LNPQRFKIACIQTN--YCL 525


>X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 218 FENYNTMFS*IVIQKVIQMMLIQHKTGIAINNG 316
           FE +NT    + IQ V+ +      TGI +++G
Sbjct: 125 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,545,979
Number of Sequences: 27780
Number of extensions: 129433
Number of successful extensions: 259
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)