Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a17
         (616 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC038225-1|AAH38225.1| 1101|Homo sapiens structural maintenance ...    31   4.3  
AL162390-1|CAH73243.1| 1101|Homo sapiens structural maintenance ...    31   4.3  
AJ310550-1|CAC39247.1| 1101|Homo sapiens SMC5 protein protein.         31   4.3  
AB011166-1|BAA25520.2| 1120|Homo sapiens KIAA0594 protein protein.     31   4.3  
X97064-1|CAA65774.1|  765|Homo sapiens Sec23 protein protein.          29   9.9  
BC036649-1|AAH36649.1|  765|Homo sapiens Sec23 homolog A (S. cer...    29   9.9  

>BC038225-1|AAH38225.1| 1101|Homo sapiens structural maintenance of
            chromosomes 5 protein.
          Length = 1101

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 570  RLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTP 430
            R P  ++D I Q +DPI+  +V  +     C+     N   Y  +TP
Sbjct: 1012 RCPFRVVDEINQGMDPINERRVFEMVVNTACK----ENTSQYFFITP 1054


>AL162390-1|CAH73243.1| 1101|Homo sapiens structural maintenance of
            chromosomes 5 protein.
          Length = 1101

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 570  RLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTP 430
            R P  ++D I Q +DPI+  +V  +     C+     N   Y  +TP
Sbjct: 1012 RCPFRVVDEINQGMDPINERRVFEMVVNTACK----ENTSQYFFITP 1054


>AJ310550-1|CAC39247.1| 1101|Homo sapiens SMC5 protein protein.
          Length = 1101

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 570  RLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTP 430
            R P  ++D I Q +DPI+  +V  +     C+     N   Y  +TP
Sbjct: 1012 RCPFRVVDEINQGMDPINERRVFEMVVNTACK----ENTSQYFFITP 1054


>AB011166-1|BAA25520.2| 1120|Homo sapiens KIAA0594 protein protein.
          Length = 1120

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 570  RLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTP 430
            R P  ++D I Q +DPI+  +V  +     C+     N   Y  +TP
Sbjct: 1031 RCPFRVVDEINQGMDPINERRVFEMVVNTACK----ENTSQYFFITP 1073


>X97064-1|CAA65774.1|  765|Homo sapiens Sec23 protein protein.
          Length = 765

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
 Frame = -2

Query: 597 TKRARAKRIRLPLEIIDTILQY---LDPISHAKVVGLTTRVKCRLLRDNNVE-DY-LKLT 433
           + R  A R+ +P+  + T L+    L PI +  V  L +R  CR + +   + DY  KL 
Sbjct: 26  SSRLEATRMVVPVAALFTPLKERPDLPPIQYEPV--LCSRTTCRAVLNPLCQVDYRAKLW 83

Query: 432 PANYHFTTDQFICNYLGITDHPMTPYLVPLLS 337
             N+ +  +QF  +Y GI++      L+P  S
Sbjct: 84  ACNFCYQRNQFPPSYAGISELNQPAELLPQFS 115


>BC036649-1|AAH36649.1|  765|Homo sapiens Sec23 homolog A (S.
           cerevisiae) protein.
          Length = 765

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
 Frame = -2

Query: 597 TKRARAKRIRLPLEIIDTILQY---LDPISHAKVVGLTTRVKCRLLRDNNVE-DY-LKLT 433
           + R  A R+ +P+  + T L+    L PI +  V  L +R  CR + +   + DY  KL 
Sbjct: 26  SSRLEATRMVVPVAALFTPLKERPDLPPIQYEPV--LCSRTTCRAVLNPLCQVDYRAKLW 83

Query: 432 PANYHFTTDQFICNYLGITDHPMTPYLVPLLS 337
             N+ +  +QF  +Y GI++      L+P  S
Sbjct: 84  ACNFCYQRNQFPPSYAGISELNQPAELLPQFS 115


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,270,893
Number of Sequences: 237096
Number of extensions: 1568285
Number of successful extensions: 3045
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3045
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)