Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a15
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.0  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   4.0  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    26   5.3  
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    26   5.3  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.3  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    25   9.3  

>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 221 EEMISIAVQHLKNFLHPSFVQYNYKKNINASSSKSFV 111
           E  IS   + L N LH ++   NYK+++ A +++SFV
Sbjct: 91  ENHISATTEDLYNSLHGTY--NNYKQDLYARTARSFV 125


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 638 YEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNH 534
           Y+     +++  +P Y DD ++GV D  L  +TN+
Sbjct: 818 YDFMAHRVVITFEPRYSDDTNNGVFDLVLTTHTNY 852


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = -2

Query: 536 HKFVDSVKFAGSVYEHIKSKQFPIES-MYYESLVTPVRLFL---SHVLMYRRDPKTGFVV 369
           H+ +    F      HIK   F + S +  +  +  +++ L   ++V++  R  +    V
Sbjct: 329 HRDLKPENFLVGASGHIKLTDFGLSSGIISKKKIESMKIRLQEVNNVVVPERSMRERRQV 388

Query: 368 YKTLLNNDPMHKHNLM 321
           ++TLL+ DP++ H+++
Sbjct: 389 FRTLLSQDPVYAHSVV 404


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/71 (18%), Positives = 32/71 (45%)
 Frame = -2

Query: 425 LFLSHVLMYRRDPKTGFVVYKTLLNNDPMHKHNLMCMSTNNSPLYALIYILNIKTVRNAT 246
           LF  + L  + D +    +YK  +++  + KH +  +   +   YA+  ++NI    +  
Sbjct: 34  LFSLNALAKKGDKRAVDAIYKAFIDDSELLKHEMAYVMGQSGQQYAVQPLINIVNDLDQQ 93

Query: 245 ITIGEDKMEEM 213
           + +  +  E +
Sbjct: 94  VMVRHEAAEAL 104


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/68 (20%), Positives = 33/68 (48%)
 Frame = -2

Query: 377 FVVYKTLLNNDPMHKHNLMCMSTNNSPLYALIYILNIKTVRNATITIGEDKMEEMISIAV 198
           F + + L   DP+ + N+    T +  +  +   + +  ++NA  +   D++ E   +A 
Sbjct: 508 FQILENLDAEDPLFRANVHLHMTYDQAIIIMSRPVLLHKMKNAKNSPRVDRINEDCILAA 567

Query: 197 QHLKNFLH 174
           +HL + +H
Sbjct: 568 RHLISLVH 575


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 656 YQGLLKYEANYKMLIVNNKPLYVDDYDDGVQD 561
           Y  L+ +   Y+     N P  VD+ + G++D
Sbjct: 326 YLYLINFHREYRKFFEENAPFSVDEVEPGLED 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,646
Number of Sequences: 5004
Number of extensions: 56680
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)