Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a15
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0394 - 3487360-3488229                                           30   2.4  
06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588...    30   2.4  
04_03_0898 + 20660769-20660973,20661077-20661204,20661295-20661687     28   7.3  
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171...    28   9.7  

>08_01_0394 - 3487360-3488229
          Length = 289

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = -1

Query: 465 RKHVLRVACDAGAFVFVARTNVQTRPQNGLCSIQNAAEQRPYA*AQPNVYEHQQ*SAVCA 286
           R H+L VA  AG  VF A T    R Q G+C +  A         QP   +    S   A
Sbjct: 91  RAHILEVA--AGCDVFEALTAYARRRQRGVCVLSAAGTVANVTLRQPQSAQPGPASPAVA 148

Query: 285 HLHSK 271
            LH +
Sbjct: 149 TLHGR 153


>06_01_0786 -
           5881178-5881303,5881523-5881627,5882078-5882169,
           5882267-5882336,5882639-5882724,5882916-5883017,
           5883375-5883597,5883693-5883758,5883896-5883986,
           5884019-5884057,5885401-5885548,5885623-5885715,
           5885782-5885886,5886645-5886826,5886912-5887084
          Length = 566

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -2

Query: 650 GLLKYEANYKMLIVNNKPLYVDDYDDGVQDRF---LIVYTN-HKFVDSVKFAGSVYEHIK 483
           G+ K+EA Y   +V N+  Y +       DRF   +I++      V S   A ++Y+ IK
Sbjct: 446 GMHKFEAYYIDNLVGNRKAYFERSPINFVDRFSCPIILFQGLEDTVVSPVQATTIYKAIK 505

Query: 482 SKQFPIESMYYE 447
            K  P+  + YE
Sbjct: 506 DKGLPVALVEYE 517


>04_03_0898 + 20660769-20660973,20661077-20661204,20661295-20661687
          Length = 241

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +2

Query: 323 LGCAYA*GRCSAAFCILQSPF-WGRVCTLVRATKTNAPASQATRNTCFLSETVWT*CVRT 499
           L CA      +AA  +  +   WGR     RA +  A AS A         T+W  CV  
Sbjct: 134 LSCAAQMAAAAAAMALTTATATWGRRSRRARAVR-RASASVAL---AVAGLTLWLWCVYL 189

Query: 500 RSRQT*RCLQIYGLCKQLKICLV 568
           R     RC + +G+ +++ +  V
Sbjct: 190 RFLPGLRCFRCFGVLRRVAVAAV 212


>02_05_1059 + 33815979-33816235,33816467-33816732,33817149-33817192,
            33817363-33817539,33817638-33817964,33818067-33818192,
            33818518-33818622,33818815-33820125,33820221-33820382,
            33820416-33820517,33820549-33821272,33821358-33821451,
            33821824-33821986
          Length = 1285

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/75 (22%), Positives = 38/75 (50%)
 Frame = -2

Query: 326  LMCMSTNNSPLYALIYILNIKTVRNATITIGEDKMEEMISIAVQHLKNFLHPSFVQYNYK 147
            ++CM T+      L+++L   +++N T+ +G+D  ++  ++A    +   HP   Q   +
Sbjct: 946  VLCMKTD------LLFVLVHTSMQNNTLEVGKDVAKDTDNVANAEEQVLNHPLAEQVKSE 999

Query: 146  KNINASSSKSFVFNE 102
            K I    S + + +E
Sbjct: 1000 KQIYPGISTTLICSE 1014


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,565,782
Number of Sequences: 37544
Number of extensions: 330230
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)