Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a15
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr...    32   0.53 
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr...    32   0.53 
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele...    32   0.53 
Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic mul...    30   1.6  
AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell...    30   1.6  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    29   3.8  
U41272-3|ABM01866.1|  186|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
           protein F02A9.6 protein.
          Length = 1295

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +2

Query: 311 CSYTLGCAYA*GRCSAAFCILQSPFWGRVCTLVRATKTNAPASQATRNTCFLSETVWT*C 490
           CS + G  Y  GRC   FC+ +  + G  C + R             N C  + T    C
Sbjct: 329 CSRSNGTCYNDGRCINGFCVCEPDYIGDRCEINRKDFKFPDIQSCKYNPCVNNAT----C 384

Query: 491 VRTR-SRQT*RC-LQIYGL-CKQLKIC 562
           +  + S  +  C L  YGL C+Q  +C
Sbjct: 385 IDLKNSGYSCHCPLGFYGLNCEQHLLC 411


>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
           protein F02A9.6 protein.
          Length = 1295

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +2

Query: 311 CSYTLGCAYA*GRCSAAFCILQSPFWGRVCTLVRATKTNAPASQATRNTCFLSETVWT*C 490
           CS + G  Y  GRC   FC+ +  + G  C + R             N C  + T    C
Sbjct: 329 CSRSNGTCYNDGRCINGFCVCEPDYIGDRCEINRKDFKFPDIQSCKYNPCVNNAT----C 384

Query: 491 VRTR-SRQT*RC-LQIYGL-CKQLKIC 562
           +  + S  +  C L  YGL C+Q  +C
Sbjct: 385 IDLKNSGYSCHCPLGFYGLNCEQHLLC 411


>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
           C.elegans glp-1 gene,complete cds. ).
          Length = 1295

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +2

Query: 311 CSYTLGCAYA*GRCSAAFCILQSPFWGRVCTLVRATKTNAPASQATRNTCFLSETVWT*C 490
           CS + G  Y  GRC   FC+ +  + G  C + R             N C  + T    C
Sbjct: 329 CSRSNGTCYNDGRCINGFCVCEPDYIGDRCEINRKDFKFPDIQSCKYNPCVNNAT----C 384

Query: 491 VRTR-SRQT*RC-LQIYGL-CKQLKIC 562
           +  + S  +  C L  YGL C+Q  +C
Sbjct: 385 IDLKNSGYSCHCPLGFYGLNCEQHLLC 411


>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical
           protein ZK512.5 protein.
          Length = 1232

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 8/154 (5%)
 Frame = -2

Query: 611 VNNKPLY-VDDYDDGVQDRFLIV--YTNHKFVDSVKFAGSVYEHIKSKQFPIESMYYESL 441
           VNNKP   +D++       F     Y + K +   K    + E    KQ   + + YE  
Sbjct: 271 VNNKPYNNIDEFHVIFNREFYSYRGYGDSKDLALFKVCKRMQEEFSLKQLEADRLAYEKA 330

Query: 440 ----VTPVRL-FLSHVLMYRRDPKTGFVVYKTLLNNDPMHKHNLMCMSTNNSPLYALIYI 276
                   +L F  H +  R +PK      + +L+N P+H H+ +  +T       L+ I
Sbjct: 331 RQEAAESEKLDFNQHKIEEREEPKLNISQPEEVLSNGPLHYHSCLQFATIGVG-GKLVII 389

Query: 275 LNIKTVRNATITIGEDKMEEMISIAVQHLKNFLH 174
               T+ + T       +    S+ V  LK FLH
Sbjct: 390 KPAGTIDSIT-----GHVLSTSSVHVDDLKTFLH 418


>AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic
            multivulva protein LIN-35 Rb protein.
          Length = 961

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 554  LIVYTNHKFVDSVKFAGSVYEHIKSKQFPIESMYYESLVTPVRLFLSHVLMYRRDPKT 381
            +I Y N +F D +K+     +    +      +  ES + PVR++L+H L  +  PKT
Sbjct: 876  IIKYYNIEFRDRIKYIIGQIDSASDEDLMEMPVATESGLMPVRVYLTHKLSIQTLPKT 933


>AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell
            lineage protein 35 protein.
          Length = 961

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 554  LIVYTNHKFVDSVKFAGSVYEHIKSKQFPIESMYYESLVTPVRLFLSHVLMYRRDPKT 381
            +I Y N +F D +K+     +    +      +  ES + PVR++L+H L  +  PKT
Sbjct: 876  IIKYYNIEFRDRIKYIIGQIDSASDEDLMEMPVATESGLMPVRVYLTHKLSIQTLPKT 933


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
           protein F46C3.3 protein.
          Length = 2557

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 144 LFIIVLNKRGMQKVFQMLHGNTYHLLHFVFSYCNSSIAHRFNV*NVNERIQRTIV 308
           LF  VLN+ G+Q    +  G    L H+ F   N++    F + +VNERI+   V
Sbjct: 332 LFKWVLNRIGLQLKCSLHTGVISILDHYGFEKYNNNGVEEFLINSVNERIENLFV 386


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 140 YSFYNCTEQTRDAKSFSNAARQYLSSPP 223
           Y + NCTE   D   +SN A   +S+PP
Sbjct: 23  YHYDNCTEIMEDDHMYSNVADGQISAPP 50


>U41272-3|ABM01866.1|  186|Caenorhabditis elegans Hypothetical
           protein T03G11.10 protein.
          Length = 186

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 416 TKTNAPASQATRNTCFLSETVWT*CVRTRSRQT*RCLQIYGLCKQLKICLVHRRHNR 586
           T+ N  A +  R+ C   ++ W  CVR+ SR   R + +  + +  K C + R+  R
Sbjct: 38  TEDNRSAHKQIRSLCTRVKS-WETCVRSCSRDNARAILLSSMDQWKKFCALMRKPTR 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,098,029
Number of Sequences: 27780
Number of extensions: 330109
Number of successful extensions: 825
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)