Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14a13
(292 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 3.0
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 24 5.2
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 24 5.2
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 24 5.2
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 23 6.9
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 23 9.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 23 9.1
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 23 9.1
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch... 23 9.1
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 23 9.1
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 23 9.1
>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 139
Score = 24.6 bits (51), Expect = 3.0
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 78 EQKLNCKYKKIEFN*LYIYFEFN 10
++KL ++I FN +Y+Y F+
Sbjct: 100 QEKLKAPRRRISFNRVYVYINFS 122
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 23.8 bits (49), Expect = 5.2
Identities = 10/35 (28%), Positives = 14/35 (40%)
Frame = +2
Query: 44 SIFLYLQFSFCSANVIASDNGTRPCNIKANNFNKL 148
S +L FC N+ D C+I + KL
Sbjct: 822 SAYLLKSIKFCDPNITPHDGDASLCDISEGSARKL 856
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 23.8 bits (49), Expect = 5.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 23 YMYN*LNSIFLYLQFSFCSANVI 91
+M N ++S LYL+ SFCS+N +
Sbjct: 1199 HMLNFISST-LYLKVSFCSSNFL 1220
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 23.8 bits (49), Expect = 5.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 178 HFTDYKHVMLKSIIFLNYLTSVYIFNLAR 264
HF D K +L I+F N VY+ + R
Sbjct: 105 HFLDLKKPLLPQILFGNIKKDVYLDQVHR 133
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 23.4 bits (48), Expect = 6.9
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 116 CNIKANNFNKLLCNVVLS 169
C+I+ NN + L+C++ LS
Sbjct: 734 CSIRENNLDGLVCSLPLS 751
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 23.0 bits (47), Expect = 9.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 273 YWISGEIKDVDAS 235
Y+IS E KDVDA+
Sbjct: 220 YYISSEAKDVDAA 232
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 23.0 bits (47), Expect = 9.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 166 LSSVHFTDYKHVMLKSIIFLNYL 234
+S VH T +KH ++ + + YL
Sbjct: 804 MSGVHHTRFKHPLVMNPLLFRYL 826
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 23.0 bits (47), Expect = 9.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 285 NEEFYWISGEIKDVDAS 235
N+E YWI+ EIK + S
Sbjct: 345 NKESYWIAREIKRIVGS 361
>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 202
Score = 23.0 bits (47), Expect = 9.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 217 IFLNYLTSVYIFNLA 261
+F N L S+YIFN A
Sbjct: 131 LFTNNLVSIYIFNKA 145
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 23.0 bits (47), Expect = 9.1
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = -2
Query: 273 YW--ISGEIKDVDASQVIQKYNRFKHHMFVISKVN 175
YW + G + S KY RF HMF+ N
Sbjct: 925 YWSDLGGSANHMQQSDYGFKYRRFLPHMFLEGDFN 959
>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 23.0 bits (47), Expect = 9.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 270 WISGEIKD-VDASQVIQKYNRFKHHMFVISKVNR 172
W++G V A +QK HH+FV+S + R
Sbjct: 36 WVTGTGDAIVIAPSGVQKERMELHHLFVMSLITR 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 914,741
Number of Sequences: 5004
Number of extensions: 13926
Number of successful extensions: 39
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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