Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14a12
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0227 + 16601538-16601908,16603197-16603378,16603495-166035... 36 0.028
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 31 0.80
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 31 0.80
09_06_0095 + 20833313-20835073 31 1.4
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128... 31 1.4
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 31 1.4
09_04_0197 - 15522167-15523524,15525416-15525683 30 1.8
09_03_0165 + 12936028-12936398,12936807-12936810 30 1.8
08_02_1127 + 24496838-24497590 30 2.4
03_05_0292 + 22846273-22846377,22847161-22847823 30 2.4
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 30 2.4
02_03_0107 - 15303890-15304060,15304158-15304248,15304505-153046... 30 2.4
08_02_1210 + 25314569-25314596,25315271-25315455,25315539-253156... 29 3.2
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623 29 3.2
01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803... 29 3.2
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334... 29 3.2
10_08_0234 - 16067579-16068157 29 4.3
01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819 29 4.3
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 29 5.6
09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852 29 5.6
07_03_0851 + 22012836-22014017,22016668-22016734,22016774-220168... 29 5.6
06_01_0424 + 3041296-3041860,3042701-3042786,3042858-3043147,304... 29 5.6
05_07_0350 - 29457444-29457871,29458786-29461456 29 5.6
02_05_1081 + 33971950-33972606 29 5.6
01_07_0260 - 42364769-42364777,42364884-42365354 29 5.6
01_05_0144 - 18585776-18586223,18586338-18586417 29 5.6
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 29 5.6
07_03_1257 - 25241194-25242018 28 7.4
07_01_1113 - 10292781-10293299 28 7.4
05_07_0195 - 28331445-28331641,28331841-28331934,28332019-283320... 28 7.4
05_01_0495 - 4136871-4136906,4137043-4137171,4137545-4137694,413... 28 7.4
03_06_0711 - 35682293-35682952 28 7.4
02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357... 28 7.4
06_03_0324 - 19591267-19592097,19592266-19592583,19592827-19593108 28 9.8
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168... 28 9.8
03_01_0056 - 471338-471919,472013-472213 28 9.8
>02_03_0227 +
16601538-16601908,16603197-16603378,16603495-16603577,
16604609-16604717,16606754-16606806,16606988-16607023
Length = 277
Score = 36.3 bits (80), Expect = 0.028
Identities = 27/71 (38%), Positives = 30/71 (42%)
Frame = -2
Query: 216 GEAHVRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGP 37
G V G G PA E RGA+ R EA R +R G G G AG G G
Sbjct: 2 GAPAVEARRGTVKMGAPAVEARRGAAKRWEARRR--RGRRGDGGAGGGGAAGRGE-DGGA 58
Query: 36 GFAGQEVNGSE 4
G G+ V G E
Sbjct: 59 GGGGESVCGEE 69
>12_01_0445 -
3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 31.5 bits (68), Expect = 0.80
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = -3
Query: 374 TENEWNEGRNQTVKALEDAIEG-EKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYA 198
T N E Q K E+A+ G E+ E A ++LL + ++N L+++ ++ +
Sbjct: 183 TINAKEELVRQHAKVTEEAVLGWEQAESEVAALKKLLEASAQKNGSLEVQVSHLAEKNAS 242
Query: 197 YTEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCIADL 36
RLD L++ + LAQ+ + + VTK+ + E L I +L
Sbjct: 243 LEVQVSRLDEALKECVRQLHLAQEDQAEKVHDVVTKSQELESENSKLQNRITEL 296
>04_03_0501 + 16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 31.5 bits (68), Expect = 0.80
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 165 AREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQE 19
AR+++R A +++ +Q D + + G+ GP+ GPG G +
Sbjct: 899 ARKMDRAADEEAAGSKQVNEDQMDVDNSNADGDEFVGPIPPGPGTQGDD 947
>09_06_0095 + 20833313-20835073
Length = 586
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -3
Query: 278 QELLIQAKKENVLLQLEAAYRERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMVDWIV 105
+EL +QA+KE +EAA + A +++ R Q K + +R +HM ++ +
Sbjct: 324 RELKVQARKEAEKFWIEAAATAKKAQALQDLEERYKQQFIKPSYDREDISEHMQEYFL 381
>05_05_0132 -
22611030-22611908,22612016-22612135,22612644-22612856,
22612968-22613288,22613421-22613504
Length = 538
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Frame = -2
Query: 291 ARAGTGAPHPGQEGERAPAARGRLQGEAHVRLH*GEAASGLPAREVER-GASSRPEAHGR 115
AR G P P +EG R P E VR G A P R R G R A
Sbjct: 383 ARGGERQPGPRREGRRRPPL-AAAHDEPAVR---GAAEEAEPRRRRRRPGERRRGAADAE 438
Query: 114 LDSEQRDQGDHSGPGEAGAGPLHR 43
L ++ + + G GP HR
Sbjct: 439 LHADDQVREGQGGSAGGDRGPRHR 462
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 30.7 bits (66), Expect = 1.4
Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Frame = -2
Query: 327 GGRN*GREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLH*GEAASGLPAREVER 148
GG+ GR R G G+ HP G P +GR +H H G G P +
Sbjct: 134 GGQYQGRGGHYQGRGGQGSHHP---GGGPPEYQGRGGPGSH---HPG---GGPPDYQGRG 184
Query: 147 GASSRPEAHGRLDSEQRDQGDHSGPGEAGA--GPLHRGP-GFAGQEV-NGSER 1
G+ S G + + RD GP G P + GP G G+ V +GS R
Sbjct: 185 GSGSHHPGGGPPEYQPRDYQGRGGPRPRGGMPQPYYGGPRGSGGRSVPSGSSR 237
>09_04_0197 - 15522167-15523524,15525416-15525683
Length = 541
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -1
Query: 397 GWTRKLKRPRTNGTKVGTKP 338
G++++L RPR+NGT + TKP
Sbjct: 416 GFSQRLTRPRSNGTYLSTKP 435
>09_03_0165 + 12936028-12936398,12936807-12936810
Length = 124
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Frame = -2
Query: 180 ASGLPAREVERGASSRPEAHG-----RLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEV 16
+ G PA+ +++G H R + E R G G G RG GF +E
Sbjct: 55 SQGAPAQRLDQGQVGEGGRHAQCRLHRQEEESRGGSSMKGGGRQGGSSRTRGGGFEEREA 114
Query: 15 NGSE 4
GS+
Sbjct: 115 QGSQ 118
>08_02_1127 + 24496838-24497590
Length = 250
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 92 WSRCSLSSRPCASGRDDAPRSTSRA 166
WSR S S RPC+SG R+ +RA
Sbjct: 156 WSRPSRSRRPCSSGSAPGVRTATRA 180
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 327 GGRN*GREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLH*GEAASGLPAREVE- 151
GGR G DG AR G G G G R R H GEAA+G AR +
Sbjct: 60 GGRGDGARDGGGARGGGGRGARGGGGARGGGGR-----------HGGEAATGAEARRLPD 108
Query: 150 -RGASS 136
RGA++
Sbjct: 109 VRGAAA 114
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 386 PCPTKRPTLVRISRELHTP*PTVTVRSNIRAPLH 487
PCPT VR+S + P PTV V S + AP H
Sbjct: 146 PCPT-----VRVSSAVGAPCPTVRVSSAVGAPCH 174
>02_03_0107 -
15303890-15304060,15304158-15304248,15304505-15304614,
15304715-15304784,15306365-15306558
Length = 211
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -2
Query: 339 RESTGGRN*GREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLH*GEAASGLPAR 160
R+ST GR+ G DG + A A H G+ AAR + + R G A P R
Sbjct: 28 RQSTRGRSTGSGDGEESEALAAAVHAGKISREDAAARRMARTKQTARKSTGGKAPRKPLR 87
Query: 159 EV 154
+
Sbjct: 88 AI 89
>08_02_1210 +
25314569-25314596,25315271-25315455,25315539-25315648,
25315756-25315909,25316213-25316237,25316566-25316756,
25316837-25316899,25317012-25317075,25318078-25318109
Length = 283
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3
Query: 413 PKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQ 234
P L + +D+E+ E + G + K DAI EK +EL I K+ VLL+
Sbjct: 37 PNLHSNVDREIRQIEQQAYTGVLRAFKVQSDAITWEKESLITELRKELQISDKEHRVLLK 96
>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
Length = 400
Score = 29.5 bits (63), Expect = 3.2
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = -2
Query: 303 DGAVARAGTGAPHPGQEGERAP----AARGRLQGEAHVRLH*GEAASGLPAREVERGASS 136
D A AR T +P P +AP A + QG+A +AA+ + +E + A
Sbjct: 186 DIAAART-TPSPPPSHAFSKAPVRAAAVAEQAQGQAAAVAEQAQAAA-MAEQEQGQAAPV 243
Query: 135 RPEAHGRLDSEQ-RDQGDHSGPGEAGAGPLHRGPG 34
+A +EQ + Q G G AGAG H G G
Sbjct: 244 AAQAQAAAMAEQAQGQAAGGGRGGAGAGGGHGGAG 278
>01_06_0735 -
31579201-31579208,31579402-31579467,31580222-31580307,
31580396-31580430,31580586-31580669,31580754-31580843,
31581267-31581304,31582042-31582108
Length = 157
Score = 29.5 bits (63), Expect = 3.2
Identities = 26/107 (24%), Positives = 47/107 (43%)
Frame = -3
Query: 371 ENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYT 192
E E E + ++ E+ E E + + +G E LIQ + N++ +E + T
Sbjct: 39 EEEKEEEEDDIEESEEEESEDESEGKAKHKGTEGLIQIENPNLVKAKNIKAKEVDLGKTT 98
Query: 191 EVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDR 51
E+ RR E+ +E++ A + + T+ D E+ AL R
Sbjct: 99 ELSRR-----EREEIEKQKAHERYMKLQEQGKTEQARKDLERLALIR 140
>01_01_0450 -
3344203-3344259,3344339-3344506,3344743-3344956,
3345039-3345101,3345582-3345769,3345846-3346029,
3346535-3346606,3346676-3346787,3346878-3346953,
3347050-3347100,3347179-3347260,3347331-3347567,
3347650-3347772,3348141-3348326,3348680-3349625,
3350426-3350551,3350683-3350811,3350918-3351049,
3351167-3351301,3351450-3351575,3352080-3352148,
3352149-3352205,3352302-3352436,3352600-3352704,
3352841-3352906,3353333-3353503,3353806-3353983
Length = 1395
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 162 REVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRG-PGFAGQEVNGSER 1
R + +SR +AH L+ E+ + ++ GEA A LH G FA Q N S +
Sbjct: 367 RSITASENSRKKAHVVLEGEEPVKNVNNDTGEAIAPMLHAGMQKFAPQNRNSSHK 421
>10_08_0234 - 16067579-16068157
Length = 192
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -2
Query: 147 GASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGS 7
G +A G S G +G G + A + GP +A + NG+
Sbjct: 119 GGGGGGQAGGNWGSSGSGDGSGAGSGSSSANTYYGGPSYANADANGN 165
>01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819
Length = 266
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -3
Query: 362 WNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERL 207
W G T A+ E E+T++W A E +Q + ++E +Y+ +L
Sbjct: 28 WRHGAPPTYDAVNSLFEAERTQEWPAGSLEETVQNAIKT--WEMELSYKAKL 77
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.7 bits (61), Expect = 5.6
Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Frame = -2
Query: 342 NRESTGGRN*GREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLH*GEAASGLPA 163
NR GG+ R G + + G R+ ++R R + + R + S +
Sbjct: 1203 NRRGFGGKGRDRSYSRSPDRGRSRGYDRRSGSRSLSSRSRSRSRSWSRSR-SRSRSWSRS 1261
Query: 162 REVERGAS-SRPEAHGRLDSEQRDQGDHSG----PGEAGAGPLHRGPGFAGQEVNGS 7
R R S SR ++ + R SG P GAGP GPG GS
Sbjct: 1262 RSRSRSPSRSRSRSYDQGAGPARRPRPRSGFDVLPPATGAGPASTGPGPVAVPAPGS 1318
>09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852
Length = 506
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/102 (21%), Positives = 45/102 (44%)
Frame = -3
Query: 404 AAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEA 225
+ W+ +E N++ N VK + +G + EL +QA+KE +E
Sbjct: 285 SGWVSQEQHC--NDYKVPDNLRVKFITAVFKGNS--RILDHKGELKVQARKEAEKFWIEE 340
Query: 224 AYRERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMVDWIVSN 99
A E+ A +++ R Q K R+ +H+ ++ +++
Sbjct: 341 AATEKKTQALQDMEERFKQQFIKLGYARKGIPEHIQEYYLTD 382
>07_03_0851 +
22012836-22014017,22016668-22016734,22016774-22016868,
22017304-22017717
Length = 585
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 174 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAG 55
GL A EV+ R G + +E+ GD S G+ G G
Sbjct: 517 GLEAAEVDEPEEERRVVDGAVAAEEVAAGDESAEGDVGGG 556
>06_01_0424 +
3041296-3041860,3042701-3042786,3042858-3043147,
3043225-3043285,3043773-3043868,3044448-3044603,
3044811-3044987
Length = 476
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 389 KEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE-AAYRE 213
+E+E + NEG N+ K ++ EK + + E L A + N L+ E + RE
Sbjct: 337 REIECLHKQLNEGENKASKERSRRMKSEKLVKTLSSQVEQLRSANERNANLERELSECRE 396
Query: 212 R 210
R
Sbjct: 397 R 397
>05_07_0350 - 29457444-29457871,29458786-29461456
Length = 1032
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/70 (35%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = +1
Query: 586 GIKPSLTLPGSPLTGRAKVFWSCVATSEAEPRATSAVHAVCLL--APERKATRDNIIYRI 759
G P T PGS GRA V W A A AV A ER+ R R
Sbjct: 637 GPAPGTTTPGSGGDGRAPVMWLAAALGLLACSVAFAAAAVATTRSAIERR-RRSGWQMRA 695
Query: 760 FYKLFPKCED 789
F K+ CED
Sbjct: 696 FQKVRFGCED 705
>02_05_1081 + 33971950-33972606
Length = 218
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +2
Query: 299 PSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPT--KRPTLVRISRELHTP*PTVTVRSNI 472
P S P P D R+ R ++ PT K P R ++ HT ++S
Sbjct: 112 PVSSPSPAPVAAQAAAVDQRAPRVPAVAQAAPTDQKAPRPARSKQQQHTAAVPTKIKSVA 171
Query: 473 RAPLHRFPCCTGMLPDP 523
AP++ P + P+P
Sbjct: 172 DAPVYAGPAFSSASPEP 188
>01_07_0260 - 42364769-42364777,42364884-42365354
Length = 159
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 297 AVARAGTGAPHPGQEGERAPAA 232
A+A G GA G+EGE+ PAA
Sbjct: 132 AIAGCGAGAVDAGEEGEKRPAA 153
>01_05_0144 - 18585776-18586223,18586338-18586417
Length = 175
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = -2
Query: 270 PHPGQEGERAPAARGRLQGEAHVRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQRDQ 91
PHP Q + PA + + R G G P R +E A E R E R +
Sbjct: 12 PHPSQPFIKTPANKTNIIAR---RFANGSRGFGAPRRLLEASAKREGEGEARKAEEIRRE 68
Query: 90 GD 85
GD
Sbjct: 69 GD 70
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 446 PTVTVRSNIRAPLHRFPCCTGMLPDPHQKCKDPSHQFSSGR 568
PT T R PLH F C + DPH PS++ +GR
Sbjct: 437 PTTTALQK-RGPLHIFLC---NVSDPHGNASQPSNRKGTGR 473
>07_03_1257 - 25241194-25242018
Length = 274
Score = 28.3 bits (60), Expect = 7.4
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Frame = +2
Query: 272 APVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCP-------TKRPTLVRISRE 430
A PA + +PSS P L+P S +++R RSLQ P P T P + SR
Sbjct: 15 AECPATSPSPSSPPPLQPRPRSPRPMP-QAVRHRSLQPPAPDVAGRDSTPSPASMTPSRC 73
Query: 431 LHTP*PTVTVRSNIRAPLHRFP 496
T T T R LH P
Sbjct: 74 RTTLASTTTTRRRPPRRLHSRP 95
>07_01_1113 - 10292781-10293299
Length = 172
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -3
Query: 674 SASDVATHDQKTFARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLA 513
S+ D AT + PG +RL + + + H + GP+ G+GL+
Sbjct: 91 SSVDAATKGNPPRSARTTSAPGSLRLPEVAQRVVELLHHRHWWFGPWALGLGLS 144
>05_07_0195 -
28331445-28331641,28331841-28331934,28332019-28332099,
28332186-28332234,28332334-28332419,28332513-28332740,
28332819-28332857,28332958-28333047,28333207-28333269,
28333371-28333449,28333539-28333585,28333668-28333730,
28333814-28333864,28333977-28334060,28334162-28334226,
28334559-28334676,28334775-28334825,28335228-28335314,
28335633-28335712,28336676-28336793
Length = 589
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 525 CGSGNIPVQQGNLCNGARILLRTVTVGH 442
CG + PV++GN CNGA + GH
Sbjct: 542 CGVVSSPVRRGNYCNGATKQQKLYQNGH 569
>05_01_0495 -
4136871-4136906,4137043-4137171,4137545-4137694,
4137782-4137847,4138124-4138168,4139022-4139102,
4139202-4139283,4139571-4139642,4140473-4140573,
4140690-4140806,4140929-4141249
Length = 399
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 591 YS*RMVPILPLENWCDGS 538
Y+ RM PI+P+ENW GS
Sbjct: 213 YNPRMDPIIPVENWRKGS 230
>03_06_0711 - 35682293-35682952
Length = 219
Score = 28.3 bits (60), Expect = 7.4
Identities = 25/84 (29%), Positives = 35/84 (41%)
Frame = +2
Query: 272 APVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHTP*PT 451
AP+ A A +P SLP P S +D R + L P++ P+ S +P P
Sbjct: 19 APLLASAESPISLPPASAPTASTPAADER-LHPADAAL-APSQPPSEASSSAAALSP-PA 75
Query: 452 VTVRSNIRAPLHRFPCCTGMLPDP 523
S + AP H P P+P
Sbjct: 76 PPETSPLPAPSHSPPVPHSAAPEP 99
>02_03_0109 -
15333228-15334793,15335255-15335392,15335496-15335771,
15336357-15336422,15338140-15338487
Length = 797
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 722 SGASKQTACTALVARGSASDVATHDQKTFAR 630
+ A K AC ALV+RG A+D + + AR
Sbjct: 630 AAAGKLEACRALVSRGGAADAGSETALSVAR 660
>06_03_0324 - 19591267-19592097,19592266-19592583,19592827-19593108
Length = 476
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 204 VRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQRDQ-GDHSGPGEAG 61
V ++ GE GLP V GA S+ +A GR++ + S P AG
Sbjct: 177 VSVNEGEEVLGLPRLVVPAGADSKRQADGRVNRVYTGELPSQSNPSRAG 225
>03_05_0761 -
27515441-27515650,27515967-27516074,27516666-27516839,
27517185-27517469,27517688-27517920,27519422-27520139
Length = 575
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 272 APVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPC 391
AP PA P P PP ++ G++LR +L LPC
Sbjct: 114 APPPAVGGGPDPSPPRCPPFVALSGAELRG-AGDALALPC 152
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 569 FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 471
+F + V YT GV A YL + E+Y +H+
Sbjct: 47 YFGASIKVPSGYTAGVNTAFYLSNNELYPGQHD 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,625,665
Number of Sequences: 37544
Number of extensions: 502029
Number of successful extensions: 2281
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 2146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2278
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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