Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a11
         (317 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399...    31   0.20 
03_01_0545 - 4086692-4087591                                           28   1.8  
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    27   3.2  
07_03_0745 - 21160072-21160331,21160619-21160772                       26   5.6  
03_02_0686 + 10407800-10409501,10409611-10410284                       26   5.6  
07_01_0039 - 306384-306551,306645-306749,306845-306949,307030-30...    25   9.7  
02_05_0031 - 25215587-25216145,25218108-25218133,25218262-252184...    25   9.7  

>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
            41140165-41140211,41140796-41141029,41141305-41141505,
            41141506-41143407,41144140-41145303,41145574-41145879
          Length = 1737

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 21   TIVSFFILGHDVYIGKLKRFNKVMAYTLNLPSLRPFEIC 137
            T   + +L  DVY   +  F K  A    +PS+ PFE+C
Sbjct: 1598 TAAPYTVLRRDVYRPFVAAFAKATARITRMPSVAPFELC 1636


>03_01_0545 - 4086692-4087591
          Length = 299

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 117 LRPFEICSFRGVPS 158
           LRPFE+C FR VP+
Sbjct: 255 LRPFEVCGFRVVPT 268


>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
            28807638-28807763,28807819-28807968,28808497-28808541,
            28808612-28808875,28809843-28809887,28810395-28810430,
            28812048-28812816,28813063-28813925,28814024-28814182,
            28814440-28814558,28815356-28815417,28816677-28816805,
            28817395-28817460,28817757-28817890,28818025-28818162,
            28818630-28818889,28818996-28819107,28819590-28819675,
            28820655-28820735,28822841-28822928,28823222-28823260,
            28823847-28823964,28824063-28824130,28824884-28824981,
            28825238-28825397,28825691-28825816,28825876-28825945,
            28826046-28826449
          Length = 1664

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 265  KTLSDDCFMREIMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGK 107
            K L  +  +REI+++  YNT  K  +  +  V++ N  T      +K  KLGK
Sbjct: 885  KRLRLEFIVREIIDQ--YNTLRKQLNNAIPSVSISNSETLHLKMENKSGKLGK 935


>07_03_0745 - 21160072-21160331,21160619-21160772
          Length = 137

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 232 IMEKNNYNTYYKMYDRKLTYV 170
           +++KN Y TY+ ++D  L  V
Sbjct: 70  VLDKNTYKTYFNLFDTDLDIV 90


>03_02_0686 + 10407800-10409501,10409611-10410284
          Length = 791

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 247 CFMREIMEKNNYNTYYKMYDRKLTYVALK 161
           C   EI+ K+ Y T YK      T+VA+K
Sbjct: 480 CATAEILGKSTYGTVYKATMENGTFVAVK 508


>07_01_0039 -
           306384-306551,306645-306749,306845-306949,307030-307111,
           307457-307656,307754-307915,308043-308152,308255-308594,
           308675-308749,308823-309032,309140-309343,309443-309562,
           309643-309752,309832-309976,310716-310943
          Length = 787

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -2

Query: 265 KTLSDDCFMREIMEKN--NYNTYYKMYDRKLTYVALKNDGTPRKLQISK 125
           K L+D   M +   K    YNT  + Y+  L   A KN  T  KLQ  K
Sbjct: 196 KRLNDQIKMLQDTNKRLQEYNTSLQQYNSNLQADATKNGETIAKLQKEK 244


>02_05_0031 -
           25215587-25216145,25218108-25218133,25218262-25218486,
           25219809-25220111
          Length = 370

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 106 TCPACGPLKSVVFGEYRR 159
           TC    P K+  FGEYRR
Sbjct: 140 TCREPSPYKAFTFGEYRR 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,565,636
Number of Sequences: 37544
Number of extensions: 124646
Number of successful extensions: 286
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)