Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a11
         (317 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    27   0.13 
AY146729-1|AAO12089.1|  156|Anopheles gambiae odorant-binding pr...    24   1.2  
AF437888-1|AAL84183.1|  154|Anopheles gambiae odorant binding pr...    24   1.2  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    22   4.8  
AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid transpo...    22   4.8  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            22   6.4  
DQ139954-1|ABA29475.1|  451|Anopheles gambiae protein O-fucosylt...    21   8.4  
AY146755-1|AAO12070.1|  320|Anopheles gambiae odorant-binding pr...    21   8.4  
AY146754-1|AAO12069.1|  334|Anopheles gambiae odorant-binding pr...    21   8.4  

>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 316 ITCVYLCIDRCGQLYGSKTLSDDCFMREIMEKNNYNTYYKMYDR 185
           I CV LC   C  L+  + L ++  M++   K++   +Y  YD+
Sbjct: 454 IGCV-LCSPGCFSLFRGRALMENSVMKKYTTKSDQARHYVQYDQ 496


>AY146729-1|AAO12089.1|  156|Anopheles gambiae odorant-binding
           protein AgamOBP5 protein.
          Length = 156

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 172 HTSTCDRTFYNTYC 213
           +  +CD+TFY+T C
Sbjct: 131 YKDSCDKTFYSTKC 144


>AF437888-1|AAL84183.1|  154|Anopheles gambiae odorant binding
           protein protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 172 HTSTCDRTFYNTYC 213
           +  +CD+TFY+T C
Sbjct: 129 YKDSCDKTFYSTKC 142


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 66  KLKRFNKVMAYTLNLPSLRPF-EICSFRGVPSFFSATYVNL 185
           K  +  K   Y L+L  L    +IC+  G+P F +AT +++
Sbjct: 842 KEHKLTKGCGYHLDLFVLACLIQICTMMGLPWFVAATVLSI 882


>AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid
           transporter Ag_AAT8 protein.
          Length = 636

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 228 IISLIKQSSDKVFDPYSW 281
           I+  +K   DK++DP  W
Sbjct: 310 IVYFLKPQWDKIYDPKVW 327


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -2

Query: 265 KTLSDDCFMREIMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGKFSVYAMT 86
           KT+ D   +  I         + +  + L   A KNDG  + +Q SK  K   F++++ T
Sbjct: 343 KTIPDGHNVTTIAVSGQSLVSFCLASKTLVKEANKNDGNDQSVQSSKEIK-SVFALHSQT 401


>DQ139954-1|ABA29475.1|  451|Anopheles gambiae protein
           O-fucosyltransferase 2 protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 29  FIFYIRTRRVYRKT 70
           F+ ++RT+R YR+T
Sbjct: 78  FVQFLRTQRGYRRT 91


>AY146755-1|AAO12070.1|  320|Anopheles gambiae odorant-binding
           protein AgamOBP32 protein.
          Length = 320

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +1

Query: 169 PHTSTCDRTFYNTYCSY 219
           PH   C+R + +  C Y
Sbjct: 123 PHVDVCERAYESFRCYY 139


>AY146754-1|AAO12069.1|  334|Anopheles gambiae odorant-binding
           protein AgamOBP33 protein.
          Length = 334

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +1

Query: 169 PHTSTCDRTFYNTYCSY 219
           PH   C+R + +  C Y
Sbjct: 123 PHVDVCERAYESFRCYY 139


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 323,599
Number of Sequences: 2352
Number of extensions: 5760
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 21181083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)