Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14a04
(834 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical ... 32 0.58
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 31 0.77
AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock tr... 31 1.3
AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock tr... 31 1.3
AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical ... 31 1.3
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 30 1.8
AC006701-1|AAM97962.1| 327|Caenorhabditis elegans Hypothetical ... 30 2.3
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 29 5.4
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 29 5.4
AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical... 28 7.2
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical... 28 7.2
AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenase... 28 7.2
Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical pr... 28 9.5
U41547-5|AAX88831.1| 272|Caenorhabditis elegans C.elegans homeo... 28 9.5
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 28 9.5
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 28 9.5
>AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical
protein Y95B8A.7 protein.
Length = 608
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = -1
Query: 300 DKLYSEFYSLLNE--TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTT 130
D+ +E Y+ LN F +NV L+S I + + D I +++ K ++LP +TT
Sbjct: 260 DRTINEKYAGLNPGVEFISNVDRLISDINESLKYVSDKIERDVRKIPEDVVELPTTTTTT 319
Query: 129 EYVPTSISGSKK 94
E P ++ G +
Sbjct: 320 EQPPRTVLGCSR 331
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 31.5 bits (68), Expect = 0.77
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Frame = -1
Query: 333 LAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVA-- 160
LA +K+ + D+L + LN ++ AP + +++ + ++ ++ + A A
Sbjct: 33 LALVKKPDKGHDELKAFTNEQLNVFLTDHTAPFVDKVFEALTSKSYMPASTAPTSASATA 92
Query: 159 --LKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 22
LK AP+ PT+ G +K +S A + S R+ + P+
Sbjct: 93 PDLKKEKAPAEKPSKPTAPPGVQKSSSSPSASKAESRPLRKRISPPPS 140
>AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 342 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 214
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 342 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 214
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical
protein Y53C10A.12 protein.
Length = 671
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 342 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 214
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -1
Query: 777 TETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNI--NYILNVMPVMQDERKMS 604
T + CK +K L S + N+D I V+F +KK I + +V+ DE
Sbjct: 33 TLSLGTCKQQKKKKNLYSDLACRKNVDIFIIYVSFEKKKEIFLEFFHHVLQEEHDEYSAF 92
Query: 603 KRKKKVINNNKYILFN 556
K + + +Y++ N
Sbjct: 93 KEAYEEEESREYVIEN 108
>AC006701-1|AAM97962.1| 327|Caenorhabditis elegans Hypothetical
protein Y104H12D.2 protein.
Length = 327
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 768 AAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 649
AA KNE LL+ L+ SYN++ Q++ I K N NY
Sbjct: 34 AARTKNETLLSLLDKFSYNET--VQMVVIKQIGRKNNCNY 71
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 514 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 639
A PLG+L VPT Q F+ N ++ HF V+ +R+Y
Sbjct: 72 AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114
>Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical
protein F20E11.15 protein.
Length = 294
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +1
Query: 433 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 594
T LF++I + IC+ G+ ++ P L L+D+ + V ++F+ V N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245
Query: 595 LAFGHFAFVLHD 630
G FA VL +
Sbjct: 246 TNSGPFASVLRE 257
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -1
Query: 645 LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 484
++++P M K S K++ +Y + ++ +K KQ E + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 68 CLAGTEFFLFLLPLIEVGTYSVV 136
C AG FL +LPLI V TY++V
Sbjct: 739 CEAGLSTFLCMLPLIFVPTYAIV 761
>AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical
protein Y105E8B.7 protein.
Length = 269
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 264 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 422
RL C + Y+A LL LP+ + Q+ S +L RC T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260
>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
protein Y47G6A.17 protein.
Length = 1736
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -3
Query: 412 DIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQLVKRDIQ 254
++ F+R NS E++ TD + R LRNA + L +K+ ++
Sbjct: 1345 ELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVE 1397
>AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenases,
short chain protein9 protein.
Length = 319
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = -1
Query: 684 IVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAM 505
I F++ +N+ + N V++ E + + ++ NN Y + + +P + + P +
Sbjct: 67 IARFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPYV 123
Query: 504 WDLVKN 487
WD + N
Sbjct: 124 WDTINN 129
>Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical
protein T09F5.16 protein.
Length = 311
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 14 IKSVGAAVVLRRFFIEDRCLAGTEFFLFLLPLIEVGTYSVVDGATGNLSATVLNL 178
I+ V A +L FF G FF+FL+P++ + + +V G +++ +L L
Sbjct: 58 IQIVNAIYILYFFFTLFMAFFGATFFVFLIPVLLI-VFPLVTGLMHDVNEFLLGL 111
>Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical
protein F18H3.4 protein.
Length = 459
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = -1
Query: 792 EQQSFTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDER 613
EQ TE A+ +N+KLL L + ++ MDQ + N ++K + + L Q+
Sbjct: 129 EQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELT---SCQNRF 184
Query: 612 KMSKRKKKVINN 577
K K++++ I +
Sbjct: 185 KQMKQERRHIED 196
>U41547-5|AAX88831.1| 272|Caenorhabditis elegans C.elegans homeobox
protein 60 protein.
Length = 272
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = -1
Query: 789 QQSFTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNIN-YILNVMPVMQDER 613
+++ T + V +N + ++ + SN+ Q I+ K NI + V++ E
Sbjct: 79 EKALTNSEEVLRNHRDFRPIDEKDF--SNIRQSISKRFEHSKNNIRGEAATKILVLRREI 136
Query: 612 KMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVK 490
+ RK++ + N + +W+ +Q +PS +L K
Sbjct: 137 EQQGRKRRNFDKNTTDILQNWFHDHRQNPYPSDQEKAELAK 177
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 165 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVRR 4
VA + P+ VP+ ISG + + SV + + S++ +R T A P + R
Sbjct: 493 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIPEFFDLTR 544
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 165 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVRR 4
VA + P+ VP+ ISG + + SV + + S++ +R T A P + R
Sbjct: 452 VAQESPILKRRNSLVPSRISGRQSTRRSVTSVR--SMRGKRKTRAIPEFFDLTR 503
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,295,719
Number of Sequences: 27780
Number of extensions: 422262
Number of successful extensions: 1324
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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