Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14a01
(757 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q06906 Cluster: Occlusion-derived virus envelope protei... 255 8e-67
UniRef50_Q77K60 Cluster: Odv-e25; n=26; Baculoviridae|Rep: Odv-e... 142 1e-32
UniRef50_Q7T9T8 Cluster: Odv-e25; n=2; Granulovirus|Rep: Odv-e25... 107 4e-22
UniRef50_Q5YY86 Cluster: Putative uncharacterized protein; n=1; ... 38 0.27
UniRef50_A0Q3I3 Cluster: Sensor protein; n=1; Clostridium novyi ... 38 0.35
UniRef50_Q23JY6 Cluster: Putative uncharacterized protein; n=1; ... 38 0.35
UniRef50_Q4PHN2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.35
UniRef50_Q9PR00 Cluster: Uncharacterized protein UU144; n=1; Ure... 36 1.1
UniRef50_P49767 Cluster: Vascular endothelial growth factor C pr... 36 1.4
UniRef50_Q9C754 Cluster: Putative uncharacterized protein F12P21... 35 2.5
UniRef50_A6KZV8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.3
UniRef50_A4YQ81 Cluster: Putative uncharacterized protein; n=1; ... 34 3.3
UniRef50_Q3IDV8 Cluster: Putative flagellar hook-associated; n=2... 33 5.8
UniRef50_Q5KP57 Cluster: ER organization and biogenesis-related ... 33 5.8
UniRef50_Q96GC5 Cluster: 39S ribosomal protein L48, mitochondria... 33 5.8
UniRef50_Q12753 Cluster: Transcriptional activator HAA1; n=2; Sa... 33 5.8
UniRef50_Q8TZS7 Cluster: Adenosylmethionine-8-amino-7-oxononanoa... 33 7.6
>UniRef50_Q06906 Cluster: Occlusion-derived virus envelope protein
E25; n=14; Nucleopolyhedrovirus|Rep: Occlusion-derived
virus envelope protein E25 - Orgyia pseudotsugata
multicapsid polyhedrosis virus (OpMNPV)
Length = 229
Score = 255 bits (625), Expect = 8e-67
Identities = 117/196 (59%), Positives = 156/196 (79%), Gaps = 1/196 (0%)
Frame = -2
Query: 756 SLGQSSESVESD-ENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 580
SL QSS+SV+ D + ++LNVKL N ++ +R+AHGDNK+SQ+Y+AEKP+S+DDI K+G+
Sbjct: 34 SLAQSSDSVQVDPQTEQLNVKLGNNKMTYMRVAHGDNKVSQVYVAEKPMSMDDIEKQGNA 93
Query: 579 KVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVE 400
+VG NS+F+GTVYD GV+SPNA S++VT+TR TANFD+KE+K+MFIV KG+ P K +
Sbjct: 94 RVGANSLFIGTVYDQGVRSPNAPGASNDVTVTRTTANFDVKEYKNMFIVVKGLPPAKMTK 153
Query: 399 DNGMLRFEVDSMIVCLIDPNTGPLSEREVRELRKSNCTLVYTKNEAAQQVLLENNFTAIN 220
++ ML F VD + VCL+D N PLSER L S CTLVYT+N AAQQ+LLEN FT +N
Sbjct: 154 EDNMLCFTVDGLHVCLVDANAAPLSERVFARLPPSACTLVYTRNSAAQQLLLENGFTVVN 213
Query: 219 ADQTAYLKNYKSYREM 172
A+ TA+LKN+KSYRE+
Sbjct: 214 AEHTAFLKNHKSYREL 229
>UniRef50_Q77K60 Cluster: Odv-e25; n=26; Baculoviridae|Rep: Odv-e25
- Helicoverpa armigera NPV
Length = 230
Score = 142 bits (343), Expect = 1e-32
Identities = 79/201 (39%), Positives = 118/201 (58%), Gaps = 8/201 (3%)
Frame = -2
Query: 756 SLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNK 577
S GQSSES+ + +L +K N+ R+ +RI HGDNK+S++ +AE+PL+ +I+ EG+
Sbjct: 32 SSGQSSESIRENNQGQLTLKFNSPRIKTMRILHGDNKISKVCVAERPLTYSEIIDEGNRT 91
Query: 576 VGTNSIFLGTVYDYGVKS--------PNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGI 421
VG N +F+GT+ + S +A +S T R TANFDIK+FK+ FIVFK +
Sbjct: 92 VGANCVFMGTISEPSQTSTLNQQQQQQQSAGSSLPTTANRVTANFDIKQFKNTFIVFKNV 151
Query: 420 TPTKTVEDNGMLRFEVDSMIVCLIDPNTGPLSEREVRELRKSNCTLVYTKNEAAQQVLLE 241
K E M+R+E D M+ CLID + + ++RE+ S +VYT N Q L E
Sbjct: 152 EMIKIKESANMVRYESDGMVYCLIDSQSTTVP--DLREV--SYPIVVYTTNANVQLKLKE 207
Query: 240 NNFTAINADQTAYLKNYKSYR 178
++ IN T ++KN S+R
Sbjct: 208 WSYAQINDAGTMFVKNETSFR 228
>UniRef50_Q7T9T8 Cluster: Odv-e25; n=2; Granulovirus|Rep: Odv-e25 -
Adoxophyes orana granulovirus (AoGV)
Length = 217
Score = 107 bits (256), Expect = 4e-22
Identities = 64/189 (33%), Positives = 106/189 (56%)
Frame = -2
Query: 744 SSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTN 565
S +S++ NV NN + N+RIA+G+N S++ E P+ + I++ G +K G N
Sbjct: 36 SGDSIQFTPEGNANVIFNNTKSKNVRIAYGENNFSKIVALETPIRHEQIIEHG-DKAGAN 94
Query: 564 SIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVEDNGML 385
+I LG + + N +++ N TR + N IK+FK++FI FKG+ + + M+
Sbjct: 95 TICLGIIKEN--LGSNVGNSNVN---TRFSNNLTIKQFKNLFITFKGLDYVEIDSNMYMV 149
Query: 384 RFEVDSMIVCLIDPNTGPLSEREVRELRKSNCTLVYTKNEAAQQVLLENNFTAINADQTA 205
R+EV+ M+ L+D + + + +R++ C LV N +AQ VL E +T IN T
Sbjct: 150 RYEVNKMVYALLDASNSTIPDL-LRDVSYPICVLV--NNSSAQLVLKEWGYTQINDSGTL 206
Query: 204 YLKNYKSYR 178
Y+KN KS+R
Sbjct: 207 YVKNEKSFR 215
>UniRef50_Q5YY86 Cluster: Putative uncharacterized protein; n=1;
Nocardia farcinica|Rep: Putative uncharacterized protein
- Nocardia farcinica
Length = 306
Score = 37.9 bits (84), Expect = 0.27
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 289 AVGFAQFAHLSFGQRPR--VGVDQAHNHAVDFESQHAIVLYSFSGR 420
A GFA+ A +F RPR VG+D H H V Q A+VL R
Sbjct: 191 AAGFAEIAAAAFRPRPRPTVGLDHLHQHTVSVAEQAALVLEMLKAR 236
>UniRef50_A0Q3I3 Cluster: Sensor protein; n=1; Clostridium novyi
NT|Rep: Sensor protein - Clostridium novyi (strain NT)
Length = 779
Score = 37.5 bits (83), Expect = 0.35
Identities = 26/84 (30%), Positives = 44/84 (52%)
Frame = +2
Query: 320 RSDSGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTL 499
R VLG+I I+ + N+P+ +T P+ D +I+KF +P TL
Sbjct: 280 REKEAKVLGNIAIKILKGENPNNIPIINT------PIGNYKFDYE-IITKFDIPS---TL 329
Query: 500 LDVLAAFGDLTP*SYTVPRKMLLV 571
L ++F +L P SYT+P+ ++L+
Sbjct: 330 LPYKSSFINLKPLSYTIPKILVLL 353
>UniRef50_Q23JY6 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 3032
Score = 37.5 bits (83), Expect = 0.35
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 10/196 (5%)
Frame = -2
Query: 747 QSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYI-----AEKPLSIDDIVKEGS 583
+S + + +KR + N ++ N +S Y + P +D+I S
Sbjct: 1563 KSIQYYDGTNSKRTPSQTNYNQIGNYAQMTSRTNVSMQYQDGDIKGQSPYRLDEI----S 1618
Query: 582 NKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTV 403
NK+GT+ Y +K + A + N + T NF E K I F+G T
Sbjct: 1619 NKLGTSEYKQENKYSMPLKRMDIADITYNKAIILKTKNFTTDEEKGRVIAFEGSHFLPTE 1678
Query: 402 EDNGMLRFEVDSMIVCLIDPNTGPLSEREVRELRK---SNCTLVY-TKNEAAQQVLLEN- 238
D+ L E +I IDP L ++ E K N L Y K + AQ +N
Sbjct: 1679 LDSNYL--EKKGIIKKKIDPKKRELENQQSMEKGKKILENFILGYLIKKKKAQTNKKQNR 1736
Query: 237 NFTAINADQTAYLKNY 190
+ N D TA ++ Y
Sbjct: 1737 DGNDDNIDDTAQVQMY 1752
>UniRef50_Q4PHN2 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 392
Score = 37.5 bits (83), Expect = 0.35
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = +1
Query: 349 DQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHGFKFLDIKVCGAARHGHITRCAGRVWRF 528
D H+ ++ +H+ V+Y+ +GR+ Y F F D+ V GA R I +G V RF
Sbjct: 120 DLRHDEQIEECVRHSDVVYNLTGRH---YETKNFTFNDVHVTGAQRIAQIAEASG-VGRF 175
Query: 529 NSIVVYGAQKNAVSA 573
+ A N+ SA
Sbjct: 176 IHVSHLNADANSPSA 190
>UniRef50_Q9PR00 Cluster: Uncharacterized protein UU144; n=1;
Ureaplasma parvum|Rep: Uncharacterized protein UU144 -
Ureaplasma parvum (Ureaplasma urealyticum biotype 1)
Length = 243
Score = 35.9 bits (79), Expect = 1.1
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 5/173 (2%)
Frame = -2
Query: 717 NKRLNVKLNNARVANLRIAHGD-NKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVY 541
N+ +VKL N ++AN+ + + + N + Q +I+ + LS +DI K ++KV +G +
Sbjct: 13 NRDYDVKLTNVKIANIALNNDNVNNIEQNHISFRHLSTNDI-KNSNDKVEA-KFSIGLGF 70
Query: 540 DYGVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVEDNGMLRFEVDSMI 361
D K N A + T DI + + + F + VE+N L D
Sbjct: 71 DISEKLKNIAFKKLD---TNTNKLIDISDPTILRLTFYEYNKDQKVENN--LAAPTDKTK 125
Query: 360 VCLIDPNTGPLSERE-VRELRKSNCTLVY-TKNEAAQQVLLE--NNFTAINAD 214
+ +++ L V ++K N Y N A Q LL N +NAD
Sbjct: 126 ISVVEIKKSQLMNSSIVSFVKKLNKNAKYHMANIAFNQQLLPYLNKQFNVNAD 178
>UniRef50_P49767 Cluster: Vascular endothelial growth factor C
precursor; n=27; Euteleostomi|Rep: Vascular endothelial
growth factor C precursor - Homo sapiens (Human)
Length = 419
Score = 35.5 bits (78), Expect = 1.4
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 317 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 180
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>UniRef50_Q9C754 Cluster: Putative uncharacterized protein F12P21.9;
n=1; Arabidopsis thaliana|Rep: Putative uncharacterized
protein F12P21.9 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 97
Score = 34.7 bits (76), Expect = 2.5
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 603 DIVKEGSNKVGTNSIFLGTVYDYGVKSP-------NAASTSSNVTMTRGTANFDIKEFKS 445
D +KE +VGT+SIF + + SP + +S S++ + T G F + E +
Sbjct: 31 DTIKEEEREVGTDSIFPSSFNSKKISSPFTSPYSSSVSSASASASCTSGLNKFPVTENRG 90
Query: 444 MFIVFK 427
F VFK
Sbjct: 91 SFPVFK 96
>UniRef50_A6KZV8 Cluster: Putative uncharacterized protein; n=1;
Bacteroides vulgatus ATCC 8482|Rep: Putative
uncharacterized protein - Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 438
Score = 34.3 bits (75), Expect = 3.3
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = -2
Query: 750 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVG 571
G S S++ +N ++ +KL AR + IA L + YI K S+DD++ N
Sbjct: 68 GSCSASLKMTDNAQIEMKLPPARYTIVAIAG----LGEEYIVPKDPSLDDVIVMKENNRS 123
Query: 570 TNSIFLGT 547
+ ++ +GT
Sbjct: 124 SRALMMGT 131
>UniRef50_A4YQ81 Cluster: Putative uncharacterized protein; n=1;
Bradyrhizobium sp. ORS278|Rep: Putative uncharacterized
protein - Bradyrhizobium sp. (strain ORS278)
Length = 4387
Score = 34.3 bits (75), Expect = 3.3
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = -2
Query: 687 ARVANLRIAHGDNKLS-QMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYG--VKSPN 517
A+ L +A GD+ LS + + PLS+ + +G N VGT S V D G + +P
Sbjct: 2164 AQAGALFVASGDSSLSIKTGPSATPLSVQFVTSKGGNVVGTVSGAATAVADLGRVILAPG 2223
Query: 516 AASTSSNVTMTRGTAN 469
A T+ +TM +G+A+
Sbjct: 2224 ANITAKALTM-QGSAS 2238
>UniRef50_Q3IDV8 Cluster: Putative flagellar hook-associated; n=2;
Alteromonadales|Rep: Putative flagellar hook-associated
- Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 670
Score = 33.5 bits (73), Expect = 5.8
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Frame = -2
Query: 723 DENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTV 544
+E + +KLN+ AN+ +A G + + +A + DDI GS + S+ T
Sbjct: 415 NEGDKFQIKLNSEAAANITLATGRGE--DLALASPIRTADDINNTGSGAISAGSVSSVTA 472
Query: 543 YDYGVKSPNA-ASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTV 403
+ +P A A+ + GT ++ I + + P K V
Sbjct: 473 GGFTTTTPPALANGDITIVKAAGTNDYLISDGNGANVPITIAPPGKNV 520
>UniRef50_Q5KP57 Cluster: ER organization and biogenesis-related
protein, putative; n=2; Filobasidiella neoformans|Rep:
ER organization and biogenesis-related protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 836
Score = 33.5 bits (73), Expect = 5.8
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = -2
Query: 753 LGQSSESVESDENKRLNVKLN-NARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNK 577
L ++++++E++E RL K N +A++AN + N L + + + DDIVKEG K
Sbjct: 721 LRKAAQALEAEEEARLFHKDNVDAKIANWKSGKETN-LRALIASLDTVLWDDIVKEGGLK 779
Query: 576 VGTNSI 559
VG + +
Sbjct: 780 VGMHEL 785
>UniRef50_Q96GC5 Cluster: 39S ribosomal protein L48, mitochondrial
precursor; n=25; Euteleostomi|Rep: 39S ribosomal protein
L48, mitochondrial precursor - Homo sapiens (Human)
Length = 212
Score = 33.5 bits (73), Expect = 5.8
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = -2
Query: 702 VKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKS 523
+ L+ +R + HG K + AE+P K+ KV +I LGT Y+YGV
Sbjct: 40 ILLSISRPYKTKPTHGIGKYKHLIKAEEP-------KKKKGKVEVRAINLGTDYEYGVL- 91
Query: 522 PNAASTSSNVTMTRGTANF--DIKEFKSMFIVFKGITPTKTVE 400
N T+ ++T+ A + ++ S+ + PTKT+E
Sbjct: 92 -NIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIE 133
>UniRef50_Q12753 Cluster: Transcriptional activator HAA1; n=2;
Saccharomyces cerevisiae|Rep: Transcriptional activator
HAA1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 694
Score = 33.5 bits (73), Expect = 5.8
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Frame = -2
Query: 744 SSESVESDENKRLNVKLNNARVANLRIAHGD--NKLSQMYIAEKPLSIDDIVKEGSNKVG 571
SS S+ + + RLN+ N V + H + +S + E + +++ + + VG
Sbjct: 238 SSVSLPAKADSRLNMMDKNNSVGLDLLGHSKRISPISNSRVGEVSVPLEEYIPSDIDGVG 297
Query: 570 TNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVEDNG 391
+ VYD+ + S+ T G + FDI + I K + T ++ NG
Sbjct: 298 RVTDKSSLVYDWPFDESIERNFSTTATAATGESKFDIND-NCNRINSKSYSKTNSMNGNG 356
Query: 390 M 388
M
Sbjct: 357 M 357
>UniRef50_Q8TZS7 Cluster: Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase; n=2; Pyrococcus|Rep:
Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase - Pyrococcus furiosus
Length = 459
Score = 33.1 bits (72), Expect = 7.6
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = -2
Query: 702 VKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKS 523
+ + +ARV+NL D+K + E ++I D+ K K IF D +
Sbjct: 313 INVKHARVSNLNAVIVDSKTIYFFTFEPFVTITDVDKNIGRK-----IFANKPIDLQIVL 367
Query: 522 PNAASTSSNVTMTRGTANFDIKEFKSMF 439
AA+ N T TR T F+ ++S++
Sbjct: 368 GKAAAKFVNATFTRDTMKFNGNIYRSIW 395
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 714,992,312
Number of Sequences: 1657284
Number of extensions: 14738731
Number of successful extensions: 41153
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 39546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41133
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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