Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14a01
         (757 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   0.65 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   0.65 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   2.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   3.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   3.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.1  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   8.0  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 114 YTSVQIVSVQRHCHVIKHIC 55
           YTS Q+V ++R  H  K++C
Sbjct: 92  YTSSQLVELEREFHRSKYLC 111


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 114 YTSVQIVSVQRHCHVIKHIC 55
           YTS Q+V ++R  H  K++C
Sbjct: 112 YTSSQLVELEREFHRSKYLC 131


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 410 LVGVIPLNTINMDLNSLISKFAVPRVMVTLL 502
           +VGV PLN +N +   L   F   +V+ T L
Sbjct: 37  IVGVFPLNHLNEEPEKLHFTFKSWKVLYTSL 67


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -2

Query: 114 YTSVQIVSVQRHCHVIKHIC 55
           YT+ Q++ +++  H  K++C
Sbjct: 11  YTNTQLLELEKEFHFNKYLC 30


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -2

Query: 114 YTSVQIVSVQRHCHVIKHIC 55
           YT+ Q++ +++  H  K++C
Sbjct: 142 YTNTQLLELEKEFHFNKYLC 161


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 402  EDNGMLRFEVDSMIVCLIDPNTGPLSEREVRELRK 298
            +D G L F V+ +  C+I   T     +E  +LRK
Sbjct: 1072 DDEGGLEFSVNKLFKCMI--CTYKADNKENEQLRK 1104


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 402  EDNGMLRFEVDSMIVCLIDPNTGPLSEREVRELRK 298
            +D G L F V+ +  C+I   T     +E  +LRK
Sbjct: 1072 DDEGGLEFSVNKLFKCMI--CTYKADNKENEQLRK 1104


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 332 RCPNERCANCANPTAL 285
           + P E CA C N T+L
Sbjct: 723 KVPGECCAICVNATSL 738


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 588 GSNKVGTNSIFLGTVYD 538
           G+N++GT  IFL   +D
Sbjct: 492 GNNRMGTCRIFLAPQFD 508


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,255
Number of Sequences: 336
Number of extensions: 3944
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)