Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14a01
(757 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50191-8|AAK31551.3| 296|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical p... 31 1.2
Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z75530-8|CAA99792.2| 405|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p... 28 6.2
Z19154-8|CAE17741.1| 335|Caenorhabditis elegans Hypothetical pr... 28 6.2
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein. 28 6.2
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ... 28 6.2
AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical ... 28 6.2
>U50191-8|AAK31551.3| 296|Caenorhabditis elegans Hypothetical
protein T14B4.3 protein.
Length = 296
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +1
Query: 289 AVGFAQFAHLSFGQRPRVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHGFKFLD 462
+V F +FG VG QA F+ A+++ G F+Y+ H F F D
Sbjct: 38 SVSLLNFNKNAFGLGAAVGAHQAIGDEKLFQKPKALLIIVIDGLENFDYDGHAFNFTD 95
>Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical
protein F35E12.8 protein.
Length = 506
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = -2
Query: 708 LNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVK-----EGSNKVGTNSIFLGTV 544
LN+ L + L DN + + + ++ D ++K +G N NS F+G +
Sbjct: 145 LNLNLQPTQTYTLESPTNDNVVINVALVDQIGKTDIVIKLIYVYDGPN---VNSRFVGNL 201
Query: 543 YDYGVKSPNAASTSSNVT 490
YDY V SP +S N T
Sbjct: 202 YDY-VNSPTLMKSSGNST 218
>Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical
protein F35E12.8 protein.
Length = 506
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = -2
Query: 708 LNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVK-----EGSNKVGTNSIFLGTV 544
LN+ L + L DN + + + ++ D ++K +G N NS F+G +
Sbjct: 145 LNLNLQPTQTYTLESPTNDNVVINVALVDQIGKTDIVIKLIYVYDGPN---VNSRFVGNL 201
Query: 543 YDYGVKSPNAASTSSNVT 490
YDY V SP +S N T
Sbjct: 202 YDY-VNSPTLMKSSGNST 218
>Z75530-8|CAA99792.2| 405|Caenorhabditis elegans Hypothetical
protein C47E8.3 protein.
Length = 405
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 542 YTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLN-LLSPCAMRKLATRALLSFTFNRLF 718
Y + + + + T+ E ++ SS++ GF +Y +LN ++S + R + F NRL
Sbjct: 275 YLLSQSLQVFLTVWE-TINRSSLEDGFPTMYSYLNDIVSIFTLLASCLRFPIYFCCNRLI 333
Query: 719 SSDSTDSL 742
+ S D+L
Sbjct: 334 HTASVDTL 341
>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 502 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 678
RC RV R ++ Q + V+ H F+ L + Y R + + A+CD +IG
Sbjct: 656 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 715
Query: 679 H 681
H
Sbjct: 716 H 716
>Z19154-8|CAE17741.1| 335|Caenorhabditis elegans Hypothetical
protein C40H1.9 protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -3
Query: 314 CANCANPTALWCTRKTRQLSKFY---WKITLPLLMLTKPPI 201
C+NC +WC +++ S F KI+L L TKP +
Sbjct: 25 CSNCVGSGQVWCVEQSQCNSSFVSCSTKISLQLNCPTKPKV 65
>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
Length = 1167
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 502 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 678
RC RV R ++ Q + V+ H F+ L + Y R + + A+CD +IG
Sbjct: 677 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 736
Query: 679 H 681
H
Sbjct: 737 H 737
>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 502 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 678
RC RV R ++ Q + V+ H F+ L + Y R + + A+CD +IG
Sbjct: 656 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 715
Query: 679 H 681
H
Sbjct: 716 H 716
>AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical
protein F52F10.3 protein.
Length = 684
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 159 KKSLFIYYLLTYKIWYTSVQIVSVQRH 79
+K++FI +LT+ +W + I+SV+ H
Sbjct: 207 EKNIFIKIILTFSLWTNAELILSVKEH 233
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,651,936
Number of Sequences: 27780
Number of extensions: 357917
Number of successful extensions: 1045
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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