Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p24
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...   107   2e-24
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.5  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   5.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   7.8  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.8  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   7.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   7.8  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    25   7.8  

>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score =  107 bits (256), Expect = 2e-24
 Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
 Frame = -1

Query: 549 AKGLLLACIRERDPCVFLEPKILYRSA---AEEVPVEDYTLPLGKAQTLRVGAAATLVGW 379
           A+GLL A IR+ +P V LE +ILY      ++E   ED+ LP G A+  R G   T+VG 
Sbjct: 188 ARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGE 247

Query: 378 GTQVHVLLEVADMARDKLGVTCDVIDLQSILPWDEETVCNSVKKTGRCLISHEAPLTSGF 199
              V   LE AD  +   GV  +VI+L+SI P D  T+  SVKKT R +   +A    G 
Sbjct: 248 SISVVTALEAADKLKADYGVEAEVINLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGI 307

Query: 198 GAELAATVQE-ECFLHLEAPIARVTGWDAPFPH 103
           G+E+AA + E + F +L+AP+ RV+  D P P+
Sbjct: 308 GSEIAAQIMESDAFDYLDAPVERVSMADVPMPY 340


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 342 MARDKLGVTCDVIDLQSILPWDEETVCNSVKKTG 241
           ++ D    +  V D++ ILP   +T  NSVK TG
Sbjct: 522 LSPDASSSSIPVTDIKEILPSQHDTPHNSVKLTG 555


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = -1

Query: 453 VEDYTLPLGKAQTLRVGAAATLVGWGTQVHVLLEVADMARDKLG--VTCDVIDLQSILPW 280
           +ED TLP+   Q  +VG   TL G+    ++    A +    +G  VT DV  L+   P 
Sbjct: 253 MEDLTLPVDIEQNPKVGRKITLYGYLHGTNLPKHDASVHIPGVGDFVTSDVSSLEDPCPP 312

Query: 279 DEETVCNSVKKTGRCLISHEAPLTSGFGAELAATVQEECFLHLEAP 142
            +        K  R  +S +  L  G  A++   + ++  +++E P
Sbjct: 313 PD------ADKVRRRRLSEKQKLIYGPMADIGGILFDKDRVYIEVP 352


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 344 TWPGTSSASPVTSSICSRS 288
           TWP T S S  TSS  SR+
Sbjct: 127 TWPNTDSPSATTSSPISRN 145


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +3

Query: 501 TRTGPSRGCRPAADPWPLWAREAPPPGDREHVQRR---PPDFGS 623
           +R  PS   RP + P  L   + PPP  R +V  +   PP + S
Sbjct: 116 SRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPPSYSS 159


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +1

Query: 568  HHHPE-TGNMCK---EGLRTLGVVESAVPDRTAXRA 663
            ++ PE TG +C    EG  TLG++ES V  ++  RA
Sbjct: 1699 NNFPEFTGRVCPAPCEGACTLGIIESPVGIKSVERA 1734


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 332 TSSASPVTSSICSRSCPG 279
           T +A+ V+SS+C+  CPG
Sbjct: 84  TLTATEVSSSLCTTPCPG 101


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -1

Query: 522 RERDPCVFLEPKILYRSAAEEVPVEDYTLPLGKAQTLRVGAAATLVGWGTQVHVLLEVAD 343
           +  +PCV+LE K     A E+ P  ++   L +  +     +  L     ++ + +E   
Sbjct: 22  KRTNPCVYLEAK-----AVEQTPATEFNSILQEIISTEYNYSVDLKKTLNEIIMPIEGQS 76

Query: 342 MARDKLGV-TC 313
           M R+ +G+ TC
Sbjct: 77  MEREAIGICTC 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,690
Number of Sequences: 5004
Number of extensions: 50618
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)