Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p24
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical pr...   279   1e-75
AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical ...   115   4e-26
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protei...    28   5.5  
M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.     28   5.5  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    28   5.5  
Z22180-10|CAO82052.1|  360|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z22180-9|CAO82051.1|  304|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   9.6  
AF099918-2|AAN63400.1|  219|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    27   9.6  
AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical
           protein F27D4.5 protein.
          Length = 366

 Score =  279 bits (684), Expect = 1e-75
 Identities = 127/212 (59%), Positives = 159/212 (75%)
 Frame = -1

Query: 690 EYDSGALTVRAPCSAVGHGGLYHSQSPEAFFAHXXXXXXXXXXXPIAAKGLLLACIRERD 511
           ++D G LTVR    AVGHG LYHSQSPEA F H           P+ AKGLLL+CIR+ +
Sbjct: 148 QFDCGKLTVRTTWGAVGHGALYHSQSPEANFTHTPGLKLVVPRGPVQAKGLLLSCIRDPN 207

Query: 510 PCVFLEPKILYRSAAEEVPVEDYTLPLGKAQTLRVGAAATLVGWGTQVHVLLEVADMARD 331
           PC+F EPKILYR A+E+VP  DYT+PLG+A+T+R G   TLV WGTQVHV LE A +A++
Sbjct: 208 PCIFFEPKILYRLASEDVPTGDYTIPLGQAETVRSGKDLTLVAWGTQVHVALEAAQLAKE 267

Query: 330 KLGVTCDVIDLQSILPWDEETVCNSVKKTGRCLISHEAPLTSGFGAELAATVQEECFLHL 151
           KL    +VIDLQ+I PWDE+ V  SV+KTGR +++HEAP++SGFGAE+A+TVQ+ CFL+L
Sbjct: 268 KLNADVEVIDLQTIQPWDEDHVVESVQKTGRLIVTHEAPISSGFGAEIASTVQKRCFLNL 327

Query: 150 EAPIARVTGWDAPFPHVFEPFYLPDKWRCYQA 55
           E+PI RV G+D PFPHV EPFYLP   R + A
Sbjct: 328 ESPIDRVAGFDTPFPHVHEPFYLPTVHRVFDA 359


>AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical
           protein C04C3.3 protein.
          Length = 352

 Score =  115 bits (276), Expect = 4e-26
 Identities = 71/194 (36%), Positives = 104/194 (53%), Gaps = 4/194 (2%)
 Frame = -1

Query: 672 LTVRAPCSAVGHGGLYHSQSPEAFFAHXXXXXXXXXXXPIAAKGLLLACIRERDPCVFLE 493
           +  R P  A       HSQ   A++AH              AKGLL A IR+ +P VFLE
Sbjct: 134 IVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLE 193

Query: 492 PKILYRSA---AEEVPVEDYTLPLGKAQTLRVGAAATLVGWGTQVHVLLEVADMARDKLG 322
            +ILY  +    +EV  +D+ +P+GKA+  R G   T+V +   V   LE A    + +G
Sbjct: 194 NEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQL-EAIG 252

Query: 321 VTCDVIDLQSILPWDEETVCNSVKKTGRCLISHEAPLTSGFGAELAATVQE-ECFLHLEA 145
           V+ +VI+L+S+ P+D E++  SV KT   +        +G G+E+AA V E + F  L+A
Sbjct: 253 VSAEVINLRSLRPFDFESIRQSVHKTHHLVSVETGWPFAGIGSEIAAQVMESDVFDQLDA 312

Query: 144 PIARVTGWDAPFPH 103
           P+ RVTG D P P+
Sbjct: 313 PLLRVTGVDVPMPY 326


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 287 CPGTRRPCAIP 255
           CPGTRRPC +P
Sbjct: 766 CPGTRRPCDLP 776


>U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protein
           14 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 610 GGLLCTCSRSPGGGASRAHSGQGSAAGLHPREGPVRVPG 494
           GG  CTC R P G A     G+  A G+    G +  PG
Sbjct: 147 GGGCCTCHRGPPGPA--GDGGRDGADGVDGTPGEIGPPG 183


>M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 610 GGLLCTCSRSPGGGASRAHSGQGSAAGLHPREGPVRVPG 494
           GG  CTC R P G A     G+  A G+    G +  PG
Sbjct: 128 GGGCCTCHRGPPGPA--GDGGRDGADGVDGTPGEIGPPG 164


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/60 (30%), Positives = 22/60 (36%)
 Frame = -3

Query: 667 GPRAXQCGRARRTLPLPKSGGLLCTCSRSPGGGASRAHSGQGSAAGLHPREGPVRVPGTE 488
           GP         R LP+P      C C+ +PG G      GQ    G   R G    PG +
Sbjct: 120 GPPGPDAELHDRILPVPPQ----CPCTAAPGLGGPPGPPGQDGIPGNPGRNGEDGAPGPQ 175


>Z22180-10|CAO82052.1|  360|Caenorhabditis elegans Hypothetical
           protein K11H3.1d protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 318 TCDVIDL-QSILPWDEETVCNSVKKTGRCLISHEAPLTSGFGAELAATVQEECFLHLEAP 142
           +C + DL  +        VC +  KTG+ +   E  L +G  A+   T  EE +L +   
Sbjct: 266 SCGIADLITTCYGGRNRKVCEAFVKTGKSMAEVEKELLNGQSAQGPLTA-EEVYLMMHK- 323

Query: 141 IARVTGWDAPFP 106
               TG DA FP
Sbjct: 324 ----TGLDAKFP 331


>Z22180-9|CAO82051.1|  304|Caenorhabditis elegans Hypothetical
           protein K11H3.1c protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 318 TCDVIDL-QSILPWDEETVCNSVKKTGRCLISHEAPLTSGFGAELAATVQEECFLHLEAP 142
           +C + DL  +        VC +  KTG+ +   E  L +G  A+   T  EE +L +   
Sbjct: 210 SCGIADLITTCYGGRNRKVCEAFVKTGKSMAEVEKELLNGQSAQGPLTA-EEVYLMMHK- 267

Query: 141 IARVTGWDAPFP 106
               TG DA FP
Sbjct: 268 ----TGLDAKFP 275


>Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical
           protein K11H3.1b protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 318 TCDVIDL-QSILPWDEETVCNSVKKTGRCLISHEAPLTSGFGAELAATVQEECFLHLEAP 142
           +C + DL  +        VC +  KTG+ +   E  L +G  A+   T  EE +L +   
Sbjct: 298 SCGIADLITTCYGGRNRKVCEAFVKTGKSMAEVEKELLNGQSAQGPLTA-EEVYLMMHK- 355

Query: 141 IARVTGWDAPFP 106
               TG DA FP
Sbjct: 356 ----TGLDAKFP 363


>Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical
           protein K11H3.1a protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 318 TCDVIDL-QSILPWDEETVCNSVKKTGRCLISHEAPLTSGFGAELAATVQEECFLHLEAP 142
           +C + DL  +        VC +  KTG+ +   E  L +G  A+   T  EE +L +   
Sbjct: 277 SCGIADLITTCYGGRNRKVCEAFVKTGKSMAEVEKELLNGQSAQGPLTA-EEVYLMMHK- 334

Query: 141 IARVTGWDAPFP 106
               TG DA FP
Sbjct: 335 ----TGLDAKFP 342


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/79 (26%), Positives = 30/79 (37%)
 Frame = +2

Query: 176 TVAASSAPNPDVSGASWDIKHRPVFFTELHTVSSSQGRIDCRSMTSQVTPSLSRAMSAXX 355
           T  A + P+  V   +     RP       TVS+SQG     S TS +  +   + SA  
Sbjct: 323 TTTAQATPSSSVIPTTTQTTQRPTSTGIPSTVSTSQG----TSSTSPIPSTTQTSSSAPS 378

Query: 356 XXXXXCVPQPTSVAAAPTL 412
                  P PT+     T+
Sbjct: 379 TYTSNFTPSPTTTLLTSTI 397


>AF099918-2|AAN63400.1|  219|Caenorhabditis elegans Hypothetical
           protein H05C05.1b protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -3

Query: 586 RSPGGGASRAHSGQGSAAGLHPREGPVRVPGTEDTVQVGSRRSTRRGLHATAGKGADVKS 407
           R  GGG  +  S +GSA G+    G  +  G +D  Q   + S       ++   A  KS
Sbjct: 141 RGGGGGGQKPSSSRGSARGMRGGGGHRKSGGDDDRQQQQHQNSIAEKPEGSSSGSATEKS 200


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -3

Query: 586 RSPGGGASRAHSGQGSAAGLHPREGPVRVPGTEDTVQVGSRRSTRRGLHATAGKGADVKS 407
           R  GGG  +  S +GSA G+    G  +  G +D  Q   + S       ++   A  KS
Sbjct: 645 RGGGGGGQKPSSSRGSARGMRGGGGHRKSGGDDDRQQQQHQNSIAEKPEGSSSGSATEKS 704


>AC024860-3|AAK29985.1|  345|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.2 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 297 QSILPWDEETVCNSVKKTGRCLISHEAPLTS 205
           +  L W E+ +   VK  G+C  SH   +TS
Sbjct: 83  EEFLDWREKGIVGPVKDQGKCNASHAFAITS 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,227,941
Number of Sequences: 27780
Number of extensions: 332450
Number of successful extensions: 1178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)