Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p24
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = -2

Query: 329 SSASPVTSSICSRSCPGTRRP-CA 261
           S  S +   +C R CP   RP CA
Sbjct: 96  SPNSTIAVCVCMRKCPRRHRPVCA 119


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 577  GGGASRAHSGQGSAAGLHP 521
            GG      + + SAAGLHP
Sbjct: 1714 GGLGGLGGAAEASAAGLHP 1732


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 577  GGGASRAHSGQGSAAGLHP 521
            GG      + + SAAGLHP
Sbjct: 1710 GGLGGLGGAAEASAAGLHP 1728


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 466 GCRPVQYLRFQEHARVPLADAGQQQTLGRYGPARHHHP 579
           G  P Q  + Q+H  V  +   QQQ     G A  + P
Sbjct: 220 GMHPRQQQQAQQHQGVVTSPLSQQQQAAPQGAASANLP 257


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 338 PGTSSASPVTSSICS 294
           P +SSAS   +S+CS
Sbjct: 592 PASSSASSAPTSVCS 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,379
Number of Sequences: 438
Number of extensions: 3788
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)