Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p21
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    24   2.3  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    24   3.1  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    23   4.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    23   5.3  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   7.1  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    22   9.3  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    22   9.3  

>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 125 LLRNSLSRPFSKFLRSAVKSLWPCPSIGKNDNLRCTFENIC 3
           L++  LS P+SK++       WP  S    DN R     IC
Sbjct: 18  LIQKDLSEPYSKYVYRYFVHQWPEFSFVALDNDRFIGAVIC 58


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 437

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 77 AVKSLWPCPSIGKNDNLR 24
          A++SLWP PS+ ++ + R
Sbjct: 23 ALRSLWPPPSLNESGDTR 40


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 112 VYHGHFRNFYAQQ*NRC 62
           + HG +++FY    NRC
Sbjct: 516 ILHGGYKSFYENHKNRC 532


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 64  NDFTAERKNFENGRDKL 114
           N+ T  RKNF N RD L
Sbjct: 787 NNLTEARKNFSNYRDCL 803


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 174 HM*IWSTSLRSAATLLTIAKQFITAIFEIFTLS 76
           H  + +TS      + T+A  FI+ +FEI +LS
Sbjct: 260 HNQVTNTSHLEKQRISTVATLFISKLFEIPSLS 292


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 62  WPCPSIGKNDNLRCTFENIC 3
           W C S   NDNL    +N C
Sbjct: 888 WACLSCRSNDNLGQNNDNHC 907


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 109 YHGHFRNFYAQQ*NRC 62
           Y G+F  FYA +  RC
Sbjct: 432 YKGNFSQFYATREERC 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 743,449
Number of Sequences: 5004
Number of extensions: 10811
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)