Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p21
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325...    26   3.7  
04_03_0270 - 13675169-13675334,13676902-13676984,13677057-13677302     26   3.7  
02_05_0264 + 27263562-27264830                                         26   3.7  

>10_08_0877 +
           21230447-21230815,21231855-21232208,21232417-21232504,
           21232844-21233268,21233477-21233632,21233849-21234016,
           21234170-21234310,21234393-21234629,21234710-21234823,
           21235096-21235272
          Length = 742

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -2

Query: 166 NLVDESAFGSNVINYCETVYHGHFRNFYAQQ*NRC 62
           N +     G   I  CE + H  F  ++ Q   RC
Sbjct: 192 NRLHAEGVGEATIKDCEQIIHSEFSQYHTQMKQRC 226


>04_03_0270 - 13675169-13675334,13676902-13676984,13677057-13677302
          Length = 164

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 167 EFGRRVCVRQQR-Y*LLRNSLSRPFSKFLRSAVKSLWPCPSIGKNDNLRCTFE 12
           E  R + V  QR   L+R + +RP +    S V  +W C + G N  +  T E
Sbjct: 40  ESARAIAVSDQRTIYLVRPAFTRPLTPSPISTVDLIWWCSTFGVNMFIANTVE 92


>02_05_0264 + 27263562-27264830
          Length = 422

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 26  LNYRFSQLTGTATTILLLSVKISKMAVINCFAIVNNVAAERRLVDQ 163
           L Y FS+    A +ILLLSV     A +  + ++  VA  RRL D+
Sbjct: 54  LPYTFSRTGWAAGSILLLSV-----AALTFYCMMLLVACRRRLADE 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,440,857
Number of Sequences: 37544
Number of extensions: 60250
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)