Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p21
         (179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AF016444-2|AAN73877.1|  320|Caenorhabditis elegans Serpentine re...    26   4.1  
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U80451-13|AAB37847.1|  206|Caenorhabditis elegans Glutathione s-...    25   7.1  
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    25   7.1  
DQ178635-1|ABD75714.1|  361|Caenorhabditis elegans tetraspanin f...    25   7.1  
Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
           protein C06B8.7 protein.
          Length = 3118

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 77  AVKSLWPCPSIGKNDNLRCTFENIC 3
           A K+LW CP+      +R + EN+C
Sbjct: 200 AAKNLWDCPAFSNPQKIRLS-ENLC 223


>AF016444-2|AAN73877.1|  320|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 10 protein.
          Length = 320

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +2

Query: 8   CFQ---KYTLNYRFSQLTGTATTILLLSVKISKMAVINCFA 121
           CFQ   K     R  QLT T +T   L   +  + ++ CFA
Sbjct: 195 CFQFLFKQNEKLRSEQLTSTLSTRYSLEQNLKSIEILKCFA 235


>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical
           protein C52A11.4d protein.
          Length = 2491

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 119 RNSLSRPFSKFLRSAVKSLWPCPSIGKNDNLR 24
           R+ L++PF      + + LWP P   + + +R
Sbjct: 78  RSFLTQPFRPCSTGSTRGLWPMPLQSEEERIR 109


>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical
           protein C52A11.4d protein.
          Length = 2491

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 119 RNSLSRPFSKFLRSAVKSLWPCPSIGKNDNLR 24
           R+ L++PF      + + LWP P   + + +R
Sbjct: 78  RSFLTQPFRPCSTGSTRGLWPMPLQSEEERIR 109


>U80451-13|AAB37847.1|  206|Caenorhabditis elegans Glutathione
          s-transferase protein 8 protein.
          Length = 206

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 19 VHLKLSFFPIDGHG 60
          VH KLS+FPI G G
Sbjct: 2  VHYKLSYFPIRGAG 15


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 8   CFQKYTLNYRFSQLTGTATTILLLSVKISKMAVINCFAIVNNVAAERRLVDQIHI 172
           C   YTL+ R S    T  T +L++  ++           N     RRLVD+IHI
Sbjct: 115 CVLSYTLSLRISSEYDTKMTTILMTNYLN----------YNESMESRRLVDRIHI 159


>DQ178635-1|ABD75714.1|  361|Caenorhabditis elegans tetraspanin
           family protein protein.
          Length = 361

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 8   CFQKYTLNYRFSQLTGTATTILLLSVKISKMAVINCFAIVNNVAAERRLVDQIHI 172
           C   YTL+ R S    T  T +L++  ++           N     RRLVD+IHI
Sbjct: 3   CVLSYTLSLRISSEYDTKMTTILMTNYLN----------YNESMESRRLVDRIHI 47


>Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical
           protein R07B1.9 protein.
          Length = 770

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 144 SAATLLTIAKQFITAIFEIFTLSSKIVVAVPV 49
           SA  + + A   + ++F IF LS  IVV +PV
Sbjct: 132 SALMIASGAVASLFSLFAIFLLSKIIVVTIPV 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,079,120
Number of Sequences: 27780
Number of extensions: 60251
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)