Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p20
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    29   0.82 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   0.82 
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    29   0.82 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   1.9  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    27   2.5  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    27   3.3  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   5.8  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    25   7.7  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 388 DIITNFLNTKLDCRYDCADEYIKPNCIVDTYNCCNLVF 275
           D+++   ++K D + D  D   + N + + YNC N+ F
Sbjct: 63  DLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFF 100


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 275  QKRNMNTSVDAVTKLIRLQ-NDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 99
            +K  M    D  T   RL+ +  +    +++ Y NSD  DYT+   ++PG  F    E +
Sbjct: 1124 EKDAMLEKTDETTSNRRLRAHHKIHYGEDLNIYDNSDDTDYTVNDRSSPGSPFPIETETI 1183

Query: 98   T 96
            +
Sbjct: 1184 S 1184


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 251 VDAVTKLIRLQNDVLDMMREVDQYL 177
           +D  + +IRL ND++  +RE++QYL
Sbjct: 254 LDETSSVIRLSNDLVLFLREMNQYL 278


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 550 EVLRSIFVDEPFKLWLERNTHEFDNN 473
           EV+  IF    +K W E NT  F N+
Sbjct: 318 EVIDKIFNGNAYKRWTEENTSNFSND 343


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 254 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIES 144
           S+D   +L  L NDVL     V++ LNS  PD  +++
Sbjct: 391 SMDTTVRLWNLDNDVLHKDNPVEESLNS-PPDQPVDN 426


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = -3

Query: 299 VQLLQFSFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTP 162
           + +L++SF + +++ SV A    + L+++VLD+ +   + +  D P
Sbjct: 567 ITILRWSFPRDDVHDSVQAQQIALGLRDEVLDLEKAGIKVIQCDEP 612


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 186  VHFAHHVQHVVLQTNELCHRVHGRVHVSFLKTKLQQLY 299
            V+  HHVQ  +   NE+      +V ++ ++ K+Q L+
Sbjct: 934  VYAHHHVQLRIGLDNEISQNNEAKVFLNIIRAKVQNLH 971


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 655 YKCLKILVDFLVMYVSKETNMKEYEQVYTL 566
           Y C+ +   F++ +++KET     E+V  L
Sbjct: 437 YACINLFSSFMIFFLAKETKGLTLEEVNDL 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,159
Number of Sequences: 5004
Number of extensions: 54911
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)