Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p20
         (682 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY059435-1|AAL13341.1|  609|Drosophila melanogaster GH02003p pro...    31   1.9  
AE014296-2294|AAF49806.1|  516|Drosophila melanogaster CG32130-P...    31   1.9  
AE014296-2293|AAF49808.1|  516|Drosophila melanogaster CG32130-P...    31   1.9  
AE014296-2292|AAF49807.1|  542|Drosophila melanogaster CG32130-P...    31   1.9  
AE014296-2291|AAF49809.2|  609|Drosophila melanogaster CG32130-P...    31   1.9  
AE014297-4737|AAF57145.2| 1284|Drosophila melanogaster CG11339-P...    29   5.9  

>AY059435-1|AAL13341.1|  609|Drosophila melanogaster GH02003p
           protein.
          Length = 609

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/58 (31%), Positives = 36/58 (62%)
 Frame = -3

Query: 254 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 81
           +++++ K+  +Q DVL++M +V+Q+        T E      K++ +LDEMLT+ L++
Sbjct: 437 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 483


>AE014296-2294|AAF49806.1|  516|Drosophila melanogaster CG32130-PD,
           isoform D protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/58 (31%), Positives = 36/58 (62%)
 Frame = -3

Query: 254 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 81
           +++++ K+  +Q DVL++M +V+Q+        T E      K++ +LDEMLT+ L++
Sbjct: 344 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 390


>AE014296-2293|AAF49808.1|  516|Drosophila melanogaster CG32130-PB,
           isoform B protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/58 (31%), Positives = 36/58 (62%)
 Frame = -3

Query: 254 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 81
           +++++ K+  +Q DVL++M +V+Q+        T E      K++ +LDEMLT+ L++
Sbjct: 344 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 390


>AE014296-2292|AAF49807.1|  542|Drosophila melanogaster CG32130-PC,
           isoform C protein.
          Length = 542

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/58 (31%), Positives = 36/58 (62%)
 Frame = -3

Query: 254 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 81
           +++++ K+  +Q DVL++M +V+Q+        T E      K++ +LDEMLT+ L++
Sbjct: 370 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 416


>AE014296-2291|AAF49809.2|  609|Drosophila melanogaster CG32130-PA,
           isoform A protein.
          Length = 609

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 18/58 (31%), Positives = 36/58 (62%)
 Frame = -3

Query: 254 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 81
           +++++ K+  +Q DVL++M +V+Q+        T E      K++ +LDEMLT+ L++
Sbjct: 437 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 483


>AE014297-4737|AAF57145.2| 1284|Drosophila melanogaster CG11339-PA
           protein.
          Length = 1284

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -2

Query: 276 SKKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHARLHHRILKRAG 130
           S +KH+H   R     S   R  G   RSG    ++H R H      AG
Sbjct: 533 STRKHKHRHRRTSDNESELSRGSGRSGRSGRSHHRKHRRSHRHRRDSAG 581


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,846,239
Number of Sequences: 53049
Number of extensions: 606553
Number of successful extensions: 1923
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1923
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)