Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p14
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 32   0.47 
SB_51287| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_59636| Best HMM Match : Ins_element1 (HMM E-Value=4.6)              29   5.8  

>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1358

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
 Frame = -3

Query: 322  LLTSLNLRNDVICFSKLNSLYE*NSTCKTQSRDDVICFSKLNLRND---VICLNSLYE*N 152
            L+  +N+ +D+   +K+N L++     K     D+   +K+N+ +D   V  +N  ++  
Sbjct: 1157 LVAKVNVSHDMTLVAKVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMT 1216

Query: 151  STCKTQSRDDVICFSKLNLRNDVICFSK 68
               K     D+   +K+N+ +D+   +K
Sbjct: 1217 LVAKVNVSHDMTLVAKVNVSHDMTLVAK 1244



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
 Frame = -3

Query: 322  LLTSLNLRNDVICFSKLNSLYE*NSTCKTQSRDDVICFSKLNLRND---VICLNSLYE*N 152
            L+  +N+ +D+   +K+N  ++     K     D+   +K+N+ +D   V  +N  ++  
Sbjct: 1205 LVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMT 1264

Query: 151  STCKTQSRDDVICFSKLNLRNDVICFSK 68
               K     D+   +K+N+ +D+   +K
Sbjct: 1265 LVAKVNVSHDMTLVAKVNVSHDMTLVAK 1292



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/88 (19%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
 Frame = -3

Query: 322  LLTSLNLRNDVICFSKLNSLYE*NSTCKTQSRDDVICFSKLNLRND---VICLNSLYE*N 152
            L+  +N+ +D+   +K+N  ++     K     D+   +K+N+ +D   V  +N  ++  
Sbjct: 1253 LVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMT 1312

Query: 151  STCKTQSRDDVICFSKLNLRNDVICFSK 68
               K     D+   +K+N+ +++   +K
Sbjct: 1313 LVAKVNMSHDMSLVAKVNVSHEMTLVAK 1340


>SB_51287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 453 TSSRYPI*WQATTFQRPTWTQTH 385
           T++R+   W  TT  R TWT TH
Sbjct: 249 TTTRHQTTWTTTTRHRTTWTPTH 271


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 646 HADWLWCDFHRNHAYRGTRDIACNNYVEHLNSDMGVVMLVEE 521
           H DW WC   R  + R + D A        NSD G +M  +E
Sbjct: 580 HPDWKWCTKDRKKSPRKSTDSAEIAGYSEGNSDFGEMMSDDE 621


>SB_59636| Best HMM Match : Ins_element1 (HMM E-Value=4.6)
          Length = 194

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -3

Query: 253 NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVIC 77
           N TCK  +  D +    +   ++V C       N TCK  + DD +    +   ++V C
Sbjct: 8   NVTCKLMASHDNVTCKYMTSDDNVTCKLMASHDNVTCKYMTSDDNVTCKLMASHDNVTC 66



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -3

Query: 253 NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVIC 77
           N TCK  +  D +    +   ++V C       N TCK  + DD +    +   ++V C
Sbjct: 30  NVTCKLMASHDNVTCKYMTSDDNVTCKLMASHDNVTCKYMTSDDSVTRKLMASHDNVTC 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,944,445
Number of Sequences: 59808
Number of extensions: 469518
Number of successful extensions: 1035
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)