Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p14
         (804 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2280|AAF57998.1|  233|Drosophila melanogaster CG4398-PA...    31   1.4  
AY119072-1|AAM50932.1|  747|Drosophila melanogaster LP08967p pro...    29   9.8  
AE014134-2282|AAF53246.1|  747|Drosophila melanogaster CG5204-PA...    29   9.8  

>AE013599-2280|AAF57998.1|  233|Drosophila melanogaster CG4398-PA
           protein.
          Length = 233

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 18/75 (24%), Positives = 37/75 (49%)
 Frame = -3

Query: 577 NNYVEHLNSDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLTNFESLSDLMASYNFSTPDL 398
           + +V  +N       L  +++  L S  FK  ++ A +T +N +S+   ++ +     DL
Sbjct: 160 DRFVALINEKRQKSALFAKFYQALKSAEFKAKSEAAWKT-SNVQSVVQELSRHAIDAQDL 218

Query: 397 DTNAYELMDFE*NTM 353
            T  YE++ +  NT+
Sbjct: 219 KTIGYEVISWGPNTL 233


>AY119072-1|AAM50932.1|  747|Drosophila melanogaster LP08967p
           protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 682 NDKLFRCRLCYTHADWLWCDFHRNHAYRGTRDIACNNYVEHLNSDMG 542
           N K F C LC   ++W W D  ++   +  RD + N     +N + G
Sbjct: 562 NRKPFECSLCAYRSNWRW-DITKHIRLKALRDRSHNQAQVLMNDETG 607


>AE014134-2282|AAF53246.1|  747|Drosophila melanogaster CG5204-PA
           protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 682 NDKLFRCRLCYTHADWLWCDFHRNHAYRGTRDIACNNYVEHLNSDMG 542
           N K F C LC   ++W W D  ++   +  RD + N     +N + G
Sbjct: 562 NRKPFECSLCAYRSNWRW-DITKHIRLKALRDRSHNQAQVLMNDETG 607


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,514,079
Number of Sequences: 53049
Number of extensions: 638895
Number of successful extensions: 1410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)