Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13p13
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    29   0.99 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   4.0  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   5.3  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   7.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   9.3  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 781 TCGRCRCEQCARPRPLPSRWLCGSCLCSAEACVDYAS 671
           T G C    C R R  PS++ C SC C+  + +++ S
Sbjct: 399 TNGGCYSYIC-RSRSCPSKYQCYSCRCARNSSLEFTS 434


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 138 HVTVSRKFETFDVRATRSHTFTL*NYIYKVLVDDSHSERGAHVRRRPR 281
           H    R++E    R++R+H     +Y Y+ L DD  S      R RPR
Sbjct: 184 HSRSRRRYEERSSRSSRAH-----DYDYEDLRDDDRSHERKRSRSRPR 226


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 57  VCVYISFLNLLWICVESKILTLTFFL*HVTVSRKFETFDVRATRSHTFTL*NYIY 221
           VC +  F  LL+  + + +    F   H  VS +F    +     HTFT+  + Y
Sbjct: 24  VCSF--FFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFY 76


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -1

Query: 781 TCGRCRCEQCA--RPRPLPSRWLCGS 710
           TCG   CEQCA  R R  P+   CG+
Sbjct: 268 TCGHHFCEQCAITRYRKTPTCIQCGA 293


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 127 FFYDTLRSQENLRLSTFGRHVHIHS 201
           F Y TL     L  ST G +VH H+
Sbjct: 581 FVYHTLNDIPQLNSSTIGSYVHSHN 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,804
Number of Sequences: 5004
Number of extensions: 41604
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)